how to create interacting Hi-C peaks
1
0
Entering edit mode
15 months ago
rheab1230 ▴ 140

Hello everyone, I want to ask how to create a similar image from a paper. I am using 3D-genome online tool using their capture Hi-C method. But I am not able to create this kind of results. My result is coming like this: my_results Does anyone know how to do this? Thank you.

enter image description here

chromatin interaction gene Hi-C • 942 views
ADD COMMENT
0
Entering edit mode

It's called Sashimi plot. You probably find it instructions in the docs of IGV.

ADD REPLY
0
Entering edit mode

thank you. i will go through it

ADD REPLY
0
Entering edit mode
15 months ago
Buffo ★ 2.4k

Years ago, I used Sushi (page 13), it was a very useful package for visualizing "interaction arcs". I think IGV is not an option when the arcs are many kb long or when you want to visualize interactions in long regions.

ADD COMMENT
0
Entering edit mode

Thank you. I will use this package since I am more familiar with R

ADD REPLY

Login before adding your answer.

Traffic: 1412 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6