Haploview linkage format .ped and .info file error
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12 months ago
Nai ▴ 50

I have chromsome specific vcf file, I have done tabix for indexing then perform plink with following command

/plink --file Chr1 --recode HV  --snps-only just-acgt --out SNP

It created files:

SNP.info 
SNP.ped

When I am giving these file as input in Haploview4.1. It is showing an error file has zero valid individuals

I did not have this issue. Earlier. I am not getting solution. Kindly help me

plink Haploview vcftools • 311 views
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