Herald:The Biostar Herald for Tuesday, March 28, 2023
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The Biostar Herald publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant information you may have missed. You too can submit links here.

This edition of the Herald was brought to you by contribution from Istvan Albert, and was edited by Istvan Albert,


https://academic.oup.com/gigascience/article/10/2/giab008/6137722

SAMtools and BCFtools are widely used programs for processing and analysing high-throughput sequencing data. They include tools for file format conversion and manipulation, sorting, querying, statistics, variant calling, and effect analysis amongst other methods.

Perhaps the most consequential tools of bioinformatics.

submitted by: Istvan Albert


GitHub - imgag/ngs-bits: Short-read sequencing tools (github.com)

ngs-bits - Short-read sequencing tools

submitted by: Istvan Albert


GitHub - RealTimeGenomics/rtg-tools: RTG Tools: Utilities for accurate VCF comparison and manipulation (github.com)

RTG Tools is a subset of RTG Core that includes several useful utilities for dealing with VCF files and sequence data. Probably the most interesting is the vcfeval command which performs sophisticated comparison of VCF files.

submitted by: Istvan Albert


submitted by: Istvan Albert


submitted by: Istvan Albert


GitHub - moshi4/pyGenomeViz: A genome visualization python package for comparative genomics (github.com)

pyGenomeViz is a genome visualization python package for comparative genomics implemented based on matplotlib. This package is developed for the purpose of easily and beautifully plotting genomic features and sequence similarity comparison links between multiple genomes.

submitted by: Istvan Albert


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