Entering edit mode
17 months ago
Fatemeh
•
0
I have a huge list of genomes with length of about 30000. and I am going to calculate the distance matrix for it. So it would be computationally expensive so I want to use a band for that. I could not found any function in biopython. any help would be appreciated.
Just use kmer or
mash
distances. Aligning them is a futile endeavour.