SAMtools error closing standard output: -1
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12 months ago

Command:

samtools view -bS E00192a.sam > E00192.bam

[E::bgzf_flush] File write failed (wrong size)
[main_samview] failed to write the SAM header
samtools view: error closing standard output: -1

What's the cause of this error and any ways to solve this problem?

bam Samtools • 524 views
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[[ Please read before posting a question ::: How To Ask A Good Question ]]

That goes for most of your questions which are often sparse / one-liners. Context and commands are necessary.

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