ColabFold local heterodimer prediction script making
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Entering edit mode
12 months ago
Xylanaser ▴ 80

Hey

I]m writing a simple script (for dimers now - rater heterodimers) for ColabFold local (Release v1.5.0) similar to AlphaFoldPulldown. My motivation is that it is much easier to install and less complicated. And the results are very similar. So far I have implemented the scores: pdockq, mpdockq, basic (iptm, ptm, pLDDT) [by the way, I don't know what exactly 'iptm+ptm' is because I hardly use AlphaFold2. is it an average of iptm and ptm?]. I still plan to add PI-score and others. I am asking for your suggestions on what I could add/change and for your understanding. I will eventually make the repository available on github.

Cheers
Xyl

protein prediction AlphaFold complex • 537 views
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