csv to custom manifest file

Question

[bioguy24]

Is there a tool/script that can convert a csv to bpm? That is using picard I can go from a bpm to csv but can the reverse also be done? Thanks :).

[Ram]

What's a bpm? CSV is a data format, not a file format. If bpm is a straightforward data format as well, you should be able to parse out fields are write your custom bpm.

[GenoMax]

bpm = Bead pool manifest (Illumina).

There is an example here: https://github.com/jigold/zCall/blob/master/Example_Input_Formats/example.bpm.csv

bioguy24 : You will need to do this since Picard won't.

[Ram]

Looks like bpm is also in csv format, so OP will probably only need to verify content order and create a soft link.

[bioguy24]

I will confirm the info and order, but doesn't it need to be binary, that is converted to a binary format? Thanks.

The order is the same:

Index,Name,Chromosome,Position,GenTrain Score,SNP,ILMN Strand,Customer Strand,NormID
1,1:10001102-G-T,1,10001102,0.9040,[A/C],TOP,BOT,6

Do I need to use a specific compression this file to make it binary?