Is there a tool/script that can convert a csv to bpm? That is using picard I can go from a bpm to csv but can the reverse also be done? Thanks :).
What's a bpm? CSV is a data format, not a file format. If bpm is a straightforward data format as well, you should be able to parse out fields are write your custom bpm.
bpm = Bead pool manifest (Illumina).
There is an example here: https://github.com/jigold/zCall/blob/master/Example_Input_Formats/example.bpm.csv
bioguy24 : You will need to do this since Picard won't.
Looks like bpm is also in csv format, so OP will probably only need to verify content order and create a soft link.
I will confirm the info and order, but doesn't it need to be binary, that is converted to a binary format? Thanks.
The order is the same:
Index,Name,Chromosome,Position,GenTrain Score,SNP,ILMN Strand,Customer Strand,NormID
Do I need to use a specific compression this file to make it binary?
Login before adding your answer.
Use of this site constitutes acceptance of our User Agreement and Privacy