Converting rds file to h5ad and saving raw counts as X
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13 months ago

Hello Everyone!

I have a rds file and want to convert it to h5ad such that the adata.X contains the raw counts of the rds object.

The raw counts in rds file are saved in object@assays$RNA@counts.

I tried to do it using convert function and giving assay explicitly after saving the counts in a new assay named 'Raw', but it did not work.

Has someone ever come across such issue? Or if anyone knows how to do that please help!

Thanks a lot

R seurat • 662 views

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