Add 8-mers before and after of my AA change

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10 months ago

LionisOne • 0

Hi All, could anyone please help in this?

I have mutational variants (AA change), I would like to add 8 AA before and after to my mutational variants. Is there any way to do this? Actually, I'm trying to run NetMHCons algorithm, so I need this format to find the HLA binding peptides. Your help is much appreciated. Thanks in advance!

Sample input

AGRN p.R72Q TMEM88B p.A64T FNDC10 p.D33E CAMTA1 p.S79I PADI2 p.R126L IGSF21 p.S446Y VWA5B1 p.G104W HSPG2 p.A3944T UBXN11 p.L16M CRYBG2 p.V1106L

Variants NGS detection DNAseq RNAseq • 560 views

ADD COMMENT • link updated 10 months ago by Pierre Lindenbaum 161k • written 10 months ago by LionisOne • 0

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please review or validate or comment all your previous questions: How to Download RNAseq-Clinical Follow up data of BRCA ; GISTIC-segmentation overlaps error ; GEO datasets-Single cell RNAseq analysis using seurat ; How extract specific SNP position from the bed file-Bedtools ; etc... .

please

ADD REPLY • link 10 months ago by Pierre Lindenbaum 161k

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pierre.peterlongo

Thanks for mentioning. Really sorry for the missed reply.

ADD REPLY • link 10 months ago by LionisOne • 0

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thanks ( but I'm not Pierre Peterlongo (Hi !) )

ADD REPLY • link 10 months ago by Pierre Lindenbaum 161k

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