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14 months ago
alphaflylizard
•
0
What is a simple command that I can use to convert SAM to BAM files without losing any reads info?
Thank you!
What is a simple command that I can use to convert SAM to BAM files without losing any reads info?
Thank you!
samtools view -o out.bam in.sam
Please read the samtools manual for details on pretty much any sam/bam manipulation, it's the gold standard tool.
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Here are the additional utilities of
samtools
to invest your time.https://davetang.org/wiki/tiki-index.php?page=SAMTools
Thank you! I have no bioinformatics background so this is very helpful!