How to install MetaPhlAn3?
1
0
Entering edit mode
3 months ago
sooni ▴ 20

Hello

I tried to install MetaPhlAn3 in the conda environment of WSL. However, the results are as shown in the image below.

enter image description here

What is the problem, and how can I solve it? I want to install MetaPhlAn3.

Please help me. Thank you!

MetaPhlAn3 • 614 views
ADD COMMENT
0
Entering edit mode

Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the code formatting option shown below), or use a GitHub Gist if the content volume exceeds allowed length here.

code_formatting

ADD REPLY
2
Entering edit mode
3 months ago

You seem to have conflicts with existing packages. This happens when you install many packages into the base environment. Conda suggests to make separate environments so that this doesn't happen - I personally have little to nothing installed in my base environment.

Create an environment named metaphlan that contains metaphlan:

conda create -n metaphlan -c bioconda metaphlan

conda activate metaphlan

should do the trick.

(I'd also suggest updating your conda in general, you have a bunch of warnings that an update will get rid of: conda update conda)

ADD COMMENT
0
Entering edit mode

Thank you for your answer. But, there is an error as shown in the below image. enter image description here

How can I solve it?

ADD REPLY
0
Entering edit mode

Please copy/paste error messages (10101 button to format them as code after highlighting parts that you show in shot above) instead of pasting screenshots.

ADD REPLY
0
Entering edit mode

Now that is a strange error. Killed usually means that you ran out of memory. That normally doesn't happen... I'd suggest updating conda first (or perhaps a clean install of conda?)

ADD REPLY

Login before adding your answer.

Traffic: 1337 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6