Convert several contig file of whole genome sequence into a raw nucleotide sequence
1
0
Entering edit mode
10 months ago

I have an assembled genome of many contigs in a fasta file which I get from a sequencing company. I want to make this all set of contigs into a full genome sequence fasta file without contig, is it possible? Is there any tool or program? A contig is a contiguous sequence of a genome based on a reference but I want the raw nucleotide sequence of Genome. Thanks.

allignment Genomics WGS • 494 views
ADD COMMENT
0
Entering edit mode
10 months ago
akshay ▴ 10

Your genome was assembled up to the contig level, possibly due to data limitations. If you wish to enhance contiguity, you can employ reference-based scaffolding using tools such as RagTag, especially if a reference genome is available.

ADD COMMENT

Login before adding your answer.

Traffic: 1214 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6