1000G Reference Panel Hg38 Michigan Imputation Server
1
0
Entering edit mode
11 weeks ago
yvyu • 0

Hello,

I am trying to align my data with the 1000G data set, and my data is aligned under the hg38 build. I am unable to find a reference panel that would align under the "perl cmd" for this website (https://www.chg.ox.ac.uk/~wrayner/tools/), and I only find the hg37 build. Is there one that is readily available or do I have to compute my own? Although the website does have a hg38 version, under the TOPMed Reference panel, I ideally want to utilize the 1000G Reference list.

Reference-panel Hg38 1000G • 417 views
ADD COMMENT
1
Entering edit mode

Performing pre-imputation QC of your data using hg38 TOPMed Reference Panel and later using 1KG reference (hg38) for imputation in Michigan Imputation Server should not be any problem.

ADD REPLY
0
Entering edit mode

I will look into this. Thank you.

ADD REPLY

Login before adding your answer.

Traffic: 2080 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6