Auxillary file
1
0
Entering edit mode
8 weeks ago
Bharti • 0

How to get the auxillary files to run with IgBLAST for different organism. From where can I download it.

IgBLAST • 273 views
ADD COMMENT
0
Entering edit mode
ADD COMMENT
0
Entering edit mode

To expand a bit on that, if it's not one of the predefined ones, you'll need to make your own. It's just a whitespace-separated text file with details about each J sequence. The human_gl.aux it points to has a couple comment lines that can help get you started:

#gene/allele name, first coding frame start position, chain type, CDR3 stop, extra bps beyond J coding end.                                                                                                                       
#All positions are 0-based
ADD REPLY

Login before adding your answer.

Traffic: 847 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6