mitochondrial genome assembly pipeline
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4 weeks ago
m90 ▴ 30

Hello everyone

I'm working on mitochondrial genome reassembly for rabbit, the type of reads is DNA. I know that first I need to do pre-processing analysis and then genome assembly and generate consensus, for last two steps I don't have much information about the tools that will give me good results. I need suggestions from others who have worked in this scope before on the tools I can use for assembly and to construct final consensus sequence genome.

mammals mitochondrial-genome • 269 views
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4 weeks ago
shelkmike ★ 1.2k

A good tool for mitochondrial genome assembly is GetOrganelle (https://github.com/Kinggerm/GetOrganelle)

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