Chromosomal distribution of the trancscripts count

Question

[Varsha]

I have a list of non coding transcripts and I am trying to find their chromosome location. How do I proceed with it? Thanks in advance.

[GenoMax]

Post example ID and also information about what organism these are from.

Answer 1

[ATpoint]

If you have an Ensembl ID or any other canonical transcript name then I would simply load a GTF that matches your annotations, e.g. into R using rtracklayer::import(), and then simply do a left_join operation. GTFs contain both transcript names/IDs and their coordinates in genomic space. For code examples please post a reproducible example.