Ginkgo tool for CNV

Question

[drajangirija]

Hi, has anyone tried using Ginkgo CLI for CNV analysis in single-cell WGS data? If so, can you please share the tutorial? Thanks!

[Pierre Lindenbaum]

Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. If an answer was not really helpful or did not work, provide detailed feedback so others know not to use that answer.

• DEseq2 interactions
• Association study using SNP data
• Differential gene expression design using Deseq2
• Stringtie --merge error "Warning: invalid start coordinate at line"
• Compare human genes with c.elegans
• Convert data to 0 1 matrix in R