Getting just fastqc.zip file?

Question

[star]

I am new user in RNA-seq data, I am trying to do fastqc analysis with Linux, but when I run fastqc command on my data it gives me only fastqc.zip file and not .html file or anything else to see plots.

fastqc -t 8 -o Raw-data/RNA-seq/qc/ Documents/S22_L001_R1_001.fastq

[GenoMax]

See if this is applicable: FastQC not making html output report.

Also make sure you are running fastqc in non-interactive mode. If you are using interactive-mode/GUI then follow these directions to save a report in html.

[Bastien Hervé]

Please, insert your command line to your post, to find out what's going on

[pourhangleila95]

I want to perform fastQC on my data.Do you use fastQC software for doing it?

[GenoMax]

Yes, You can either use it on command line or use the graphical user interface.

[abhilashdasari.10]

unable to open the zip

[vinay.rs]

use unzip tool to unzip the zip file.

Answer 1

[vinay.rs]

Unzip the zip file, you will have html file called fastqc_report.html inside.