Question: Looking For Tools To Find Non-Coding Rnas In Bacterial Rna-Seq Data
2
gravatar for biotech
5.4 years ago by
biotech540
United States
biotech540 wrote:

Hi,

I'm looking for tools to semi-automate finding non-coding RNAs in bacterial RNA-seq data. I've been able to find these or these tools, but I'm still quite lost. I've also seen this Biostar post.

The few papers I could find don't follow a common method.

Can anyone recommend me the best approach?

Thanks, Bernardo

rnaseq bacteria rna-seq • 1.7k views
ADD COMMENTlink modified 3.9 years ago by gufernandez1010 • written 5.4 years ago by biotech540
0
gravatar for gufernandez10
3.9 years ago by
Chile
gufernandez1010 wrote:

Hi a nice software to do it is Rockhopper , allow work with different experimental condition http://cs.wellesley.edu/~btjaden/Rockhopper/ maye you should complement with homology studied as RNA sctructure conservation and sequence homology.

 

ADD COMMENTlink written 3.9 years ago by gufernandez1010
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