Question: Do you guys know how to use net file format?
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gravatar for thejustpark
6.8 years ago by
thejustpark80
United States
thejustpark80 wrote:

Hello experts, 

I am trying to obtain human genes that overlap my mouse lncRNAs in human-mouse pairwise alignment. 
For this purpose, I have been looking at mouse-human pairwise alignment in net format, but I can't fully understand what to do. 

Is there no tool that can take in a net-formatted pairwise alignment and a bed file with genes of my interest in one species and spit out their counterparts for the other species based on the net file? I thought there should be such tools, but couldn't find one. And now I can't believe there is none for this purpose. 

If you know how to do this, or know of tools for this, please let me know. 

Thanks, 

lncrna net file format homolog • 1.4k views
ADD COMMENTlink written 6.8 years ago by thejustpark80

Cross-posted on seqanswers, where I already replied.

ADD REPLYlink written 6.8 years ago by Devon Ryan98k
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