Problem Updating GO Gene Association Files with CVS
1
0
Entering edit mode
10.0 years ago
pld 5.1k

I used the guide for obtaining the GO consortium data via building a local CVS repository, but I am having trouble obtaining two files in particular:

-rw-r----- 1 xxx xxx  866 Apr 24 14:26 gene_association.goa_rat.gz
-rw-r----- 1 xxx xxx 868 Feb 20  2006 gene_association.goa_mouse.gz

As you can see here the files are much too small to contain anything, and when I gunzip them, they only have the header. On the go website I can see that the each file should be 5MB and 4MB respectively. Has anyone faced this issue before?

Update: It seems like this is a problem in their end, I can't find the mouse or rat files in their ftp either.

go cvs gene-ontology • 2.1k views
ADD COMMENT
0
Entering edit mode
10.0 years ago
Torst ▴ 980

Probably simpler to mirror the FTP site: ftp://ftp.geneontology.org/pub/go/gene-associations/

ADD COMMENT
0
Entering edit mode

I think you may have missed my update, the mouse and rat files are not on their FTP site currently.

ADD REPLY

Login before adding your answer.

Traffic: 2002 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6