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Recent Replies
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C: Modifying fasta file based on vcf information by
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Since the documentation is very scarce, it's hard to infer that `FastaVariant` ignores indels. Yo...
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[Monocle][1] can do it to some extent, although it is not 100% automatic. The performance will de...
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Yes, I only filtered for "listed first in the file", something like this: samtools view -h i...
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@arta yes, I already checked that link but didn't get what i want. My data is a matrix of 359 row...
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Eli Korvigo • 120
This might be an old question, but these days you can basically install any version of Java in a ...
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There's many questions related to this. For example, see [this][1] from yesterday [1]: https:...
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I would assume that it does actually only check the first X reads and not all of them - would ta...
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Are the mate reads of these multimappers still in the BAM file?
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arta • 380
Have you looked [this][1] ? Apart from that, do you have to use just MATLAB, you can find more h...
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"In short, the peak in 6-bp deletions is due to repetitive elements in the genome, and a single g...
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Ragout (https://github.com/fenderglass/Ragout) is also another option.
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C: FeatureCounts fails to count fragments instead of reads by
Wietje • 110
Thank you for the link, that confirms part of my idea. I would however assume that featureCounts ...
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