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6
votes
1
answer
108
views
1
answer
DSK: readme and options
gatb written 6 days ago by sebastien.letort • 50 • updated 6 days ago by pierre.peterlongo • 820
3
votes
1
answer
203
views
1
answer
GATB - Read fasta files
gatb written 4 months ago by robi • 10 • updated 4 months ago by guillaume.rizk • 20
0
votes
1
answer
379
views
1
answer
GATB-minia-pipelne fails at bloocoo step
gatb written 10 months ago by Shyam • 100 • updated 7 months ago by Ram ♦ 15k
0
votes
1
answer
414
views
1
answer
importing a GFA2 scaffold graph
gatb written 11 months ago by egoltsman • 0 • updated 7 months ago by Rayan Chikhi • 1.3k
2
votes
1
answer
350
views
1
answer
GATB - Multithreaded iteration of paired banks ?
multithreading gatb written 9 months ago by wfd • 0 • updated 7 months ago by Rayan Chikhi • 1.3k
3
votes
1
answer
315
views
1
answer
GATB - create or manipulate data of Sequence
gatb written 8 months ago by wfd • 0 • updated 8 months ago by pierre.peterlongo • 820
1
vote
1
answer
425
views
1
answer
compiling gatb-core with external Boost and hdf5
conda bioconda packaging gatb cmake written 9 months ago by ilya_shl • 0 • updated 8 months ago by Rayan Chikhi • 1.3k
0
votes
1
answer
338
views
1
answer
Inserting k-mers into existing Graph with GATB
gatb written 10 months ago by TK • 0 • updated 9 months ago by pierre.peterlongo • 820
0
votes
0
answers
476
views
0
answers
Tool: new release for GATB, the Genome Analysis Toolbox with de-Bruijn graph
tools next-gen gatb written 15 months ago by patrick.durand • 120
0
votes
1
answer
534
views
1
answer
GATB Multithread always one core
gatb written 16 months ago by lys8918 • 0 • updated 16 months ago by Rayan Chikhi • 1.3k
0
votes
0
answers
388
views
0
answers
News: GATB-Core Library Tutorial - Making efficient NGS data analysis softwares
news next-gen tutorial gatb tool written 16 months ago by patrick.durand • 120
1
vote
0
answers
604
views
0
answers
News: Workshop on making high-performance NGS data analysis softwares
software news next-gen gatb written 18 months ago by patrick.durand • 120
0
votes
0
answers
845
views
0
answers
Tutorial: New GATB-Core Tutorial: learn the Genome Analysis Tool Box... online
tutorial next-gen gatb written 19 months ago by patrick.durand • 120
2
votes
1
answer
521
views
1
answer
Getting list of connected nodes to a node
gatb written 20 months ago by An7ar35 • 0 • updated 20 months ago by edrezen • 700
1
vote
0
answers
696
views
0
answers
News: Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
news next-gen tutorial gatb tool written 21 months ago by patrick.durand • 120 • updated 21 months ago by genomax ♦ 50k
4
votes
0
answers
649
views
0
answers
Tool: MindTheGap new release !
mindthegap gatb tool written 24 months ago by claire.lemaitre • 100
2
votes
1
answer
582
views
1
answer
Illumina mate-pair reads with TakeABreak
gatb takeabreak written 2.0 years ago by vincenzo.bonnici • 0 • updated 24 months ago by claire.lemaitre • 100
0
votes
1
answer
756
views
1
answer
Segmentation fault error while using GATB
gatb written 2.1 years ago by AriyurD • 0 • updated 2.0 years ago by Rayan Chikhi • 1.3k
7
votes
4
answers
1.6k
views
4
answers
Tool: DiscoSnp becomes DiscoSnp++
discosnp snp tool gatb indels written 3.4 years ago by pierre.peterlongo • 820 • updated 2.4 years ago by acros • 10
1
vote
0
answers
850
views
0
answers
LEON producing truncated output
leon fastq gatb written 2.6 years ago by intipedroso • 10
0
votes
1
answer
812
views
1
answer
process substitution input
dbgh5 gatb written 2.7 years ago by gmdc • 0 • updated 2.7 years ago by edrezen • 700
4
votes
2
answers
829
views
2
answers
Kmer and rev-comp in separate nodes
gatb written 2.7 years ago by Shatlyk Ashyralyyev • 20 • updated 2.7 years ago by edrezen • 700
7
votes
2
answers
1.3k
views
2
answers
How to get the histogram of a graph
gatb written 2.8 years ago by matthias.zytnicki • 10
3
votes
2
answers
1.1k
views
2
answers
Effect of Read Length?
discosnp gatb written 2.8 years ago by jfontana317 • 0 • updated 2.8 years ago by pierre.peterlongo • 820
4
votes
1
answer
1.4k
views
1
answer
GATB de Bruijn graph
sequence gatb written 3.0 years ago by Rob ♦ 2.3k
4
votes
1
answer
879
views
1
answer
GATB download links don't work
gatb written 3.0 years ago by guillaume.gautreau44 • 140 • updated 3.0 years ago by Rayan Chikhi • 1.3k
2
votes
1
answer
843
views
1
answer
Adding read information to dBG nodes
gatb minia written 3.1 years ago by R.Fuentes • 10
0
votes
1
answer
856
views
1
answer
Segmentation fault with leon
leon fastq gatb sequencing written 3.2 years ago by intipedroso • 10
8
votes
0
answers
2.2k
views
0
answers
News: New versions of Minia and DSK (2.0.x)
assembly news minia gatb dsk written 3.4 years ago by Rayan Chikhi • 1.3k
0
votes
2
answers
1.1k
views
2
answers
Build Graph lost k-mers
gatb written 3.3 years ago by lardo • 0 • updated 3.3 years ago by Brian Bushnell ♦ 15k
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