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16
votes
2
answers
1.7k
views
2
answers
Blog: Fast kmer reverse complement code using bit tricks
kmer reverse-complement gatb code blog written 4.4 years ago by Rayan Chikhi • 1.4k • updated 25 days ago by martinsteinegger • 10
3
votes
1
answer
256
views
1
answer
GATB buildNode giving errors
gatb written 7 months ago by cwright • 0 • updated 7 months ago by Rayan Chikhi • 1.4k
6
votes
1
answer
251
views
1
answer
DSK: readme and options
gatb written 8 months ago by sebastien.letort • 70 • updated 8 months ago by pierre.peterlongo • 830
3
votes
1
answer
355
views
1
answer
GATB - Read fasta files
gatb written 12 months ago by robi • 10 • updated 12 months ago by guillaume.rizk • 20
0
votes
1
answer
524
views
1
answer
GATB-minia-pipelne fails at bloocoo step
gatb written 18 months ago by Shyam • 130 • updated 15 months ago by RamRS ♦ 20k
0
votes
1
answer
578
views
1
answer
importing a GFA2 scaffold graph
gatb written 19 months ago by egoltsman • 0 • updated 15 months ago by Rayan Chikhi • 1.4k
2
votes
1
answer
488
views
1
answer
GATB - Multithreaded iteration of paired banks ?
multithreading gatb written 17 months ago by wfd • 0 • updated 15 months ago by Rayan Chikhi • 1.4k
3
votes
1
answer
500
views
1
answer
GATB - create or manipulate data of Sequence
gatb written 16 months ago by wfd • 0 • updated 16 months ago by pierre.peterlongo • 830
1
vote
1
answer
588
views
1
answer
compiling gatb-core with external Boost and hdf5
conda bioconda packaging gatb cmake written 17 months ago by ilya_shl • 0 • updated 16 months ago by Rayan Chikhi • 1.4k
0
votes
1
answer
456
views
1
answer
Inserting k-mers into existing Graph with GATB
gatb written 18 months ago by TK • 0 • updated 17 months ago by pierre.peterlongo • 830
0
votes
0
answers
623
views
0
answers
Tool: new release for GATB, the Genome Analysis Toolbox with de-Bruijn graph
tools next-gen gatb written 23 months ago by patrick.durand • 120
0
votes
1
answer
683
views
1
answer
GATB Multithread always one core
gatb written 2.0 years ago by lys8918 • 0 • updated 23 months ago by Rayan Chikhi • 1.4k
0
votes
0
answers
522
views
0
answers
News: GATB-Core Library Tutorial - Making efficient NGS data analysis softwares
news next-gen tutorial gatb tool written 23 months ago by patrick.durand • 120
1
vote
0
answers
734
views
0
answers
News: Workshop on making high-performance NGS data analysis softwares
software news next-gen gatb written 2.2 years ago by patrick.durand • 120
0
votes
0
answers
1.0k
views
0
answers
Tutorial: New GATB-Core Tutorial: learn the Genome Analysis Tool Box... online
tutorial next-gen gatb written 2.3 years ago by patrick.durand • 120
2
votes
1
answer
643
views
1
answer
Getting list of connected nodes to a node
gatb written 2.3 years ago by An7ar35 • 0 • updated 2.3 years ago by edrezen • 720
1
vote
0
answers
855
views
0
answers
News: Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
news next-gen tutorial gatb tool written 2.4 years ago by patrick.durand • 120 • updated 2.4 years ago by genomax ♦ 62k
4
votes
0
answers
779
views
0
answers
Tool: MindTheGap new release !
mindthegap gatb tool written 2.6 years ago by claire.lemaitre • 100
2
votes
1
answer
699
views
1
answer
Illumina mate-pair reads with TakeABreak
gatb takeabreak written 2.7 years ago by vincenzo.bonnici • 0 • updated 2.6 years ago by claire.lemaitre • 100
0
votes
1
answer
924
views
1
answer
Segmentation fault error while using GATB
gatb written 2.7 years ago by AriyurD • 0 • updated 2.7 years ago by Rayan Chikhi • 1.4k
7
votes
4
answers
1.8k
views
4
answers
Tool: DiscoSnp becomes DiscoSnp++
discosnp snp tool gatb indels written 4.1 years ago by pierre.peterlongo • 830 • updated 3.0 years ago by acros • 10
1
vote
0
answers
1.1k
views
0
answers
LEON producing truncated output
leon fastq gatb written 3.2 years ago by intipedroso • 10
0
votes
1
answer
931
views
1
answer
process substitution input
dbgh5 gatb written 3.4 years ago by gmdc • 0 • updated 3.4 years ago by edrezen • 720
4
votes
2
answers
953
views
2
answers
Kmer and rev-comp in separate nodes
gatb written 3.4 years ago by Shatlyk Ashyralyyev • 20 • updated 3.4 years ago by edrezen • 720
7
votes
2
answers
1.5k
views
2
answers
How to get the histogram of a graph
gatb written 3.5 years ago by matthias.zytnicki • 10
3
votes
2
answers
1.4k
views
2
answers
Effect of Read Length?
discosnp gatb written 3.5 years ago by jfontana317 • 0 • updated 3.5 years ago by pierre.peterlongo • 830
4
votes
1
answer
1.6k
views
1
answer
GATB de Bruijn graph
sequence gatb written 3.6 years ago by Rob ♦ 3.1k
4
votes
1
answer
1.0k
views
1
answer
GATB download links don't work
gatb written 3.7 years ago by guillaume.gautreau44 • 140 • updated 3.7 years ago by Rayan Chikhi • 1.4k
2
votes
1
answer
981
views
1
answer
Adding read information to dBG nodes
gatb minia written 3.8 years ago by R.Fuentes • 10
0
votes
1
answer
966
views
1
answer
Segmentation fault with leon
leon fastq gatb sequencing written 3.8 years ago by intipedroso • 10
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