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I have few Differentially expressed miRNAs out of edgeR ?
enrichment analysis pathway analysis go mirnas written 2.6 years ago by Björn • 50 • updated 2 days ago by Kevin Blighe ♦ 67k
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gogadget use with non-model organism to visualize goseq results
gogadget go go enrichment rna-seq goseq written 6 days ago by arroyo.sr • 0
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
ontologies rna-seq go annotations written 6 weeks ago by TonyCN • 30 • updated 7 days ago by Biostar ♦♦ 20
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115
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topGO on RNA-seq
rna-seq go written 21 days ago by ccstaats • 0 • updated 7 days ago by Biostar ♦♦ 20
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78
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clusterProfiler gene list retrieval
kegg reactome clusterprofiler go ontology written 20 days ago by LacquerHed • 0
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167
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Tutorial: plotting a dotplot with topGO output
dotplot tutorial topgo clusterprofiler rna-seq go written 25 days ago by rachid.boumlik • 40
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111
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GO annotations into GFF3
annotation go written 6 weeks ago by Ric • 330 • updated 6 weeks ago by JC ♦ 12k
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159
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GO Term Analysis
R rna-seq go annotation written 6 weeks ago by pthom010 • 0
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8 follow
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News: GeneSCF (Gene Enrichment Tool): Advice to users
genescf news kegg go annotation written 3.9 years ago by EagleEye ♦ 6.7k
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for go enrichment analysis which tool do you recommend?
rna-seq go written 8 weeks ago by eridanus • 10 • updated 8 weeks ago by Hamid Ghaedi • 780
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How to construct KEGG and GO visualization graph?
kegg go written 8 weeks ago by nelsonv2709 • 0 • updated 8 weeks ago by Leite • 1.1k
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GO enrichment analysis using a Text file with all the genes and GO ids associated for a non model organism
go written 5.4 years ago by joynathan2 • 20 • updated 9 weeks ago by Biostar ♦♦ 20
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117
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Non redundant ID associating with GO and Pathway
pathway alignment go written 11 weeks ago by Ric • 330
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172
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Extract genes names from GOrilla output file
gene grep sed go awk written 3 months ago by rrapopor • 10 • updated 3 months ago by rpolicastro • 2.3k
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134
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GO based on NCBI annotation
genome enrichment gsea go written 3 months ago by Jautis • 290
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199
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How do I get a list of all the GO terms (including children of children etc.) of a parent GO term
annotation go ontology written 3 months ago by lekenyon • 0 • updated 3 months ago by jared.andrews07 ♦ 7.9k
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139
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R package for GO-BP enrichment analysis with c(symbol, log2foldchange, pvalue)
R rna-seq go written 3 months ago by choijamtsm • 50
2
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What would be the best strategy to merge the GO annotation from blast2go, InterProScan, and eggnog
interproscan go blast2go rna-seq eggnog written 5 months ago by tianshenbio • 70 • updated 3 months ago by Biostar ♦♦ 20
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111
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map protein structure to cellular location through their pdb id
pdb go written 3 months ago by db4 • 10
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Gene Names From Go Accessions Numbers
go written 8.4 years ago by I am • 80 • updated 3 months ago by Biostar ♦♦ 20
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314
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Enriched GO terms not present in background annotation: BLAST2GO
annotation rna-seq go written 14 months ago by P16226 • 10 • updated 3 months ago by Biostar ♦♦ 20
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327
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6 follow
1
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GO and KEGG from DESeq2 counts
R kegg go rna-seq written 4 months ago by devarts • 20 • updated 4 months ago by eyonesi • 40
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181
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GO enrichment through protein sequences
enrichment sequences tool go proteomic written 4 months ago by anna • 10
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clusterProfiler::enrichGO() is getting very slow
R clusterprofiler go written 16 months ago by sangram_keshari • 240 • updated 4 months ago by jgarces • 20
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138
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comparing enriched GO terms between species
annotation rna-seq go written 5 months ago by martinaweil • 0
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145
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1
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Visualize GO term relationships with only ID
R visualization go ontology written 5 months ago by grapestory • 0 • updated 5 months ago by jared.andrews07 ♦ 7.9k
2
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304
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1
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Is there a package for ORA where I can supply my own gmt files?
geneset bioconductor go ora gmt files written 9 months ago by Gabriel • 80 • updated 5 months ago by Florian • 10
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How to do a GO enrichment analysis for large amount of data using R
gene R go written 14 months ago by mudithekanayake • 10 • updated 5 months ago by EagleEye ♦ 6.7k
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5 follow
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Go Analysis From De-Genes
differential-expression go written 6.8 years ago by Phil S. • 660 • updated 5 months ago by Biostar ♦♦ 20
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Blast: use best hit or top20 hits?
annotation blast blast2go go rna-seq written 5 months ago by tianshenbio • 70
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