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6
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2
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3.6k
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GO enrichment analysis using a Text file with all the genes and GO ids associated for a non model organism
go written 5.2 years ago by joynathan2 • 20 • updated 3 days ago by Biostar ♦♦ 20
0
votes
0
answers
73
views
0
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Non redundant ID associating with GO and Pathway
pathway alignment go written 19 days ago by Ric • 300
3
votes
1
answer
124
views
1
answer
Extract genes names from GOrilla output file
gene grep sed go awk written 4 weeks ago by rrapopor • 10 • updated 4 weeks ago by rpolicastro • 1.7k
0
votes
0
answers
97
views
0
answers
GO based on NCBI annotation
genome enrichment gsea go written 4 weeks ago by Jautis • 290
0
votes
1
answer
142
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1
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How do I get a list of all the GO terms (including children of children etc.) of a parent GO term
annotation go ontology written 4 weeks ago by lekenyon • 0 • updated 4 weeks ago by jared.andrews07 ♦ 7.2k
1
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0
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111
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0
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R package for GO-BP enrichment analysis with c(symbol, log2foldchange, pvalue)
R rna-seq go written 4 weeks ago by choijamtsm • 50
0
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0
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208
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0
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What would be the best strategy to merge the GO annotation from blast2go, InterProScan, and eggnog
interproscan go blast2go rna-seq eggnog written 3 months ago by tianshenbio • 50 • updated 4 weeks ago by Biostar ♦♦ 20
0
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0
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84
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0
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map protein structure to cellular location through their pdb id
pdb go written 5 weeks ago by db4 • 10
5
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2
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3.6k
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2
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Gene Names From Go Accessions Numbers
go written 8.3 years ago by I am • 80 • updated 5 weeks ago by Biostar ♦♦ 20
0
votes
0
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268
views
0
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Enriched GO terms not present in background annotation: BLAST2GO
annotation rna-seq go written 12 months ago by P16226 • 10 • updated 7 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
177
views
1
answer
GO and KEGG from DESeq2 counts
R kegg go rna-seq written 10 weeks ago by devarts • 0 • updated 10 weeks ago by eyonesi • 40
1
vote
1
answer
128
views
1
answer
GO enrichment through protein sequences
enrichment sequences tool go proteomic written 11 weeks ago by anna • 10
0
votes
2
answers
755
views
2
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clusterProfiler::enrichGO() is getting very slow
R clusterprofiler go written 14 months ago by sangram_keshari • 240 • updated 11 weeks ago by jgarces • 20
0
votes
0
answers
105
views
0
answers
comparing enriched GO terms between species
annotation rna-seq go written 12 weeks ago by martinaweil • 0
3
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1
answer
104
views
1
answer
Visualize GO term relationships with only ID
R visualization go ontology written 3 months ago by grapestory • 0 • updated 3 months ago by jared.andrews07 ♦ 7.2k
2
votes
1
answer
244
views
1
answer
Is there a package for ORA where I can supply my own gmt files?
geneset bioconductor go ora gmt files written 7 months ago by Gabriel • 60 • updated 3 months ago by Florian • 10
1
vote
2
answers
359
views
2
answers
How to do a GO enrichment analysis for large amount of data using R
gene R go written 12 months ago by mudithekanayake • 10 • updated 3 months ago by EagleEye ♦ 6.7k
4
votes
3
answers
1.8k
views
5 follow
3
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Go Analysis From De-Genes
differential-expression go written 6.6 years ago by Phil S. • 660 • updated 3 months ago by Biostar ♦♦ 20
1
vote
0
answers
133
views
0
answers
Blast: use best hit or top20 hits?
annotation blast blast2go go rna-seq written 3 months ago by tianshenbio • 50
3
votes
0
answers
298
views
0
answers
Trobules using R function goana to perform GO enrichment analysis
rnaseq R bioconductor de go written 5 months ago by Light92 • 20 • updated 3 months ago by Biostar ♦♦ 20
0
votes
2
answers
160
views
2
answers
Searching for GO terms
go written 3 months ago by monowar.hossain4518 • 0 • updated 3 months ago by Giovanni.madrigal12 • 170
4
votes
2
answers
202
views
2
answers
Comparing gene ontology for two lists of genes
go written 3 months ago by mmmmcandrew • 70 • updated 3 months ago by brianj.park • 50
1
vote
1
answer
157
views
1
answer
How to perform GO enrichment analysis on sRNA-seq
go rna-seq written 3 months ago by jomagrax • 30
1
vote
1
answer
216
views
1
answer
No enriched GO terms with 1000 more genes
clusterprofiler go written 3 months ago by Ruixuan • 0 • updated 3 months ago by Issac • 40
0
votes
0
answers
188
views
0
answers
Converting Gene Set names from msigbd to their GO (Gene Ontology) IDs
msigdb R terms go ontology written 3 months ago by msimmer92 • 260
1
vote
0
answers
166
views
0
answers
topGO analysis "MF" term error
R topgo rna-seq go written 4 months ago by sim.j.baum • 50
0
votes
0
answers
158
views
0
answers
Calculate enrichment factor from a list of GO terms
enrichment factor R go written 4 months ago by felipead66 • 70
0
votes
0
answers
144
views
0
answers
Many paralogous genes in GO enrichment results
gene enrichment rna-seq go written 4 months ago by tianshenbio • 50
2
votes
0
answers
141
views
0
answers
I have differentially expressed protein IDs that were scored between Wild-type E coli and E coli (with knockout gene). How can I generate a plot to show differences in terms of functional analysis.
geneontology proteins go goslim written 4 months ago by tpm • 10
6
votes
1
answer
218
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1
answer
What to choose as background genes in GO enrichment analysis
enrichment goseq clusterprofiler go rna-seq written 4 months ago by tianshenbio • 50 • updated 4 months ago by Papyrus • 370
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