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topGO analysis "MF" term error
R topgo rna-seq go written 3 days ago by sim.j.baum • 50
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Calculate enrichment factor from a list of GO terms
enrichment factor R go written 3 days ago by felipead66 • 50
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Many paralogous genes in GO enrichment results
gene enrichment rna-seq go written 5 days ago by tianshenbio • 50
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I have differentially expressed protein IDs that were scored between Wild-type E coli and E coli (with knockout gene). How can I generate a plot to show differences in terms of functional analysis.
geneontology proteins go goslim written 8 days ago by tpm • 10
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What to choose as background genes in GO enrichment analysis
enrichment goseq clusterprofiler go rna-seq written 9 days ago by tianshenbio • 50 • updated 9 days ago by Papyrus • 210
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Go analysis in OmicsBox (ex Blast2Go)
blast2go go omicsbox written 4 weeks ago by ovariohisterectomia • 20 • updated 9 days ago by jonasmlambert • 30
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Too many enriched GO terms using Goseq
enrichment goseq go rna-seq written 9 days ago by tianshenbio • 50
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How to get all descendants of a GO-term OR how to identifiy if a GO-term is an ancestor of another?
goatools python go written 12 days ago by aquaq • 20
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Dotplot of selected GO terms with z-score via ggplot2
ggplot2 david rna-seq go written 16 days ago by lucatucciarone • 50
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How to do pathway analysis on kinome Drosophila dataset
pathway-analysis go kinome statistical-power written 12 weeks ago by m93 • 240 • updated 19 days ago by Biostar ♦♦ 20
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News: Gene Ontology Virtual User Meeting
news gene ontology enrichment meeting go ontology written 22 days ago by laurent.albou • 0
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104
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Go enrichment analysis- blastp uniprot
blas go written 4 weeks ago by S20 • 0
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1
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Clusterprofiler error: No gene can be mapped
R clusterprofiler go enrichment go rna-seq written 7 weeks ago by tianshenbio • 50 • updated 27 days ago by Biostar ♦♦ 20
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6 follow
3
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Hypergeometric test's summary error while using GOstats
enrichment gostats go microarray written 2.0 years ago by ciemanek • 140 • updated 4 weeks ago by Biostar ♦♦ 20
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Selecting the background for GO enrichment analysis (proteomics)
proteomics enrichment clusterprofiler go written 13 months ago by Sebastian Hesse • 100 • updated 4 weeks ago by janetscully • 0
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Rank-based GO enrichment packages for R?
R go written 4.7 years ago by Dave • 70 • updated 5 weeks ago by Biostar ♦♦ 20
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Create my own universel GO db from QuickGO in R
R go ontology written 5 weeks ago by Darill • 40
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99
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Performing GO enrichment analyis on DE genes
rnaseq enrichment de go written 6 weeks ago by Light92 • 20
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Trobules using R function goana to perform GO enrichment analysis
rnaseq R bioconductor de go written 6 weeks ago by Light92 • 20
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84
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Variants selection with Gene Ontology
R snp go written 7 weeks ago by melania 2282 • 80
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mapIDs function not obtaining all GOIDs for organism
R go rna-seq written 7 weeks ago by theodore.killian • 0
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1
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154
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1
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GO annotation with entrez gene id for non-model organism
non-model organism R entrez gene id go written 3 months ago by bifStudent • 0 • updated 3 months ago by ashish • 420
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6 follow
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can you calculate GO enrichment from GO terms and IDs?
pannzer go written 2.9 years ago by Emma • 10 • updated 3 months ago by tarashanst • 0
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1
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How to create my own GO term for enrichment analysis
go term enrichment create go term go written 4.1 years ago by guhchengzi • 10 • updated 3 months ago by tarashanst • 0
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Obtain gene ontologies using curated GO list as database
R gene ontology chip-seq go ontology written 4 months ago by yepeh72919 • 10 • updated 3 months ago by Biostar ♦♦ 20
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120
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Is there a package for ORA where I can supply my own gmt files?
geneset bioconductor go ora gmt files written 3 months ago by Gabriel • 60
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2
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189
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2
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How are GO biological processes and pathways related?
pathway geneontology go written 3 months ago by D3xt3r • 0 • updated 3 months ago by i.sudbery ♦ 7.7k
2
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1
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156
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1
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Safe to convert entrez gene id to ensembl gene id
biomart rna-seq go kegg written 3 months ago by tmms • 10 • updated 3 months ago by mark.ziemann • 1.2k
3
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1
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180
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1
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Software for Gene ontology enrichment graph
cosmic gene ontology chip-seq go written 4 months ago by yepeh72919 • 10 • updated 4 months ago by svp • 80
19
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1
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23 follow
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Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
R biomart go go.db written 2.5 years ago by lihaone • 90 • updated 4 months ago by Biostar ♦♦ 20
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