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What is the best way to rank genes for GSEA?
gene ranking gsea go rna-seq written 1 day ago by Gabriel • 10 • updated 1 day ago by Pietro • 50
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63
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Enrichment via simple Fishers exact: Combine or not?
enrichment fishers go statistics written 9 days ago by Biogeek • 340
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2
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141
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ClusterProfiler fails to find GO terms
rna-seq go clusterprofiler written 25 days ago by grant.hovhannisyan • 1.5k
1
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1
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142
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1
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GO annotation file for hsa genes
database go rna-seq written 9 weeks ago by wsciekly.maciek • 0 • updated 4 weeks ago by geneontologyhelp • 20
2
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3
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226
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5 follow
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How to retrieve all GO terms at level 2 from a list input
go written 6 weeks ago by oseias.rf.junior • 0 • updated 4 weeks ago by geneontologyhelp • 20
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2
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174
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Query about gene ontology analysis in edgeR vs GSEA
edger go written 5 weeks ago by elizabethR • 70
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115
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What background to use for functional annotation analysis of RRBS DMR data?
annotation methylation rrbs go dmr written 6 weeks ago by alan.g.hudson • 0
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95
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Error when running sma3s for proteome annotation
annotation proteome go sma3s written 6 weeks ago by l.souza • 70
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1
answer
442
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1
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Normal to have high variability in Broad Institute's GSEA Output?
gsea go written 7 months ago by Kristin Muench • 410
12
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4
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4.4k
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5 follow
4
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How To Extract Go Terms From A Given Kegg Id
biomart kegg go written 6.8 years ago by Rm ♦ 7.8k • updated 7 weeks ago by Shaurya Jauhari • 40
3
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1
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131
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1
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GO Annotation of fasta sequences
annotation gene annotation go written 8 weeks ago by miles.thorburn • 80
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1
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315
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1
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Tool or package to make a plot of multiple species GO comparison
package gene ontology visualization tool go written 7 months ago by rice.researcher • 130 • updated 8 weeks ago by matz • 0
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2
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1.7k
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2
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fastq to fasta conversion
fasta fastq go written 13 months ago by monicasteffi • 10 • updated 9 weeks ago by swbarnes2 ♦ 5.2k
0
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190
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Relation between GO terms of homologous genes in different organisms.
annotation functional-annotation go written 3 months ago by zuhaibzulfiqarahmed • 0
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2
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183
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Do the gene sets of parent terms contains the gene sets of child terms in go ontology?
go written 3 months ago by xidianbill • 10 • updated 3 months ago by EagleEye ♦ 6.2k
2
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1
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281
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1
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bash & quickGO to download gene symbols of a GO term
annotations go bash written 5 months ago by Adrian Pelin • 2.2k • updated 4 months ago by EagleEye ♦ 6.2k
2
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1
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1.4k
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1
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Genes associated with GO term
gene go written 2.2 years ago by mforde84 • 1.2k • updated 4 months ago by Biostar ♦♦ 20
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166
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GO for network analysis in plant
plant go rna-seq written 4 months ago by thiagobergamoc • 0
2
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1
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185
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1
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how to compere Gene ontology for some data set from micorraray with differentiallay expressed genes
gene go written 4 months ago by Expert • 30 • updated 4 months ago by jared.andrews07 • 2.2k
4
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1
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530
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GO analysis using topGO
gene R goenrichment topgo go written 4 months ago by mannoulag1 • 60 • updated 4 months ago by Kevin Blighe ♦ 41k
4
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1
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320
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1
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How to combine all three Ontology classes (BP, MF and CC) in a single analysis ?
topgo go written 5 months ago by User1029725 • 100
0
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1
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161
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1
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Panther pathway gene list counts
panther gene ontology pathway analysis go written 5 months ago by rbronste • 230 • updated 5 months ago by c.chakraborty • 120
1
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1
answer
297
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1
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GO enrichemnt results Analysis (Volcano plot)
p value go volcano plot written 5 months ago by mayada_mazher1991 • 0 • updated 5 months ago by h.mon ♦ 24k
2
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1
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1.0k
views
1
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Clustering similiar GO terms
revigo cluster go written 3.4 years ago by Amk • 120 • updated 5 months ago by Biostar ♦♦ 20
1
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
genomics news gene ontology bioinformatics go ontology written 6 months ago by laurent.albou • 0
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Going from BlastX to GO annotation
annotation blastx go ontology written 3.2 years ago by Biogeek • 340 • updated 6 months ago by RamRS ♦ 21k
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241
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Getting a distinct set of Gene Ontology terms
gene ontology go written 7 months ago by Seigfried • 70
2
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313
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GO annotation from EnsemblPlant and JGI
jgi ensembl go chlamydomonas written 7 months ago by ytlin610 • 60
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3.4k
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2
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GO Enrichment Analysis representation
go written 4.8 years ago by int11ap1 • 320 • updated 7 months ago by Biostar ♦♦ 20
12
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1
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15 follow
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Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
R biomart go go.db written 16 months ago by lihaone • 50 • updated 7 months ago by Dunja • 10
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