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GO Analysis Clarification using GOstats using hyperGTest()
gene ontology rna-seq go written 4 days ago by brismiller • 10 • updated 4 days ago by EagleEye • 5.5k
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46
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goatools: how to write out (or draw) the entire GO hierarchy for all genes from one species (human)?
goatools go written 5 days ago by dp • 10
3
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3
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315
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3
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Hypergeometric test's summary error while using GOstats
enrichment gostats go microarray written 7 weeks ago by ciemanek • 90 • updated 15 days ago by Dunja • 0
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1
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2.2k
views
1
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Genes Under Go Category
go clustering written 5.6 years ago by upendrakumar.devisetty • 350 • updated 4 weeks ago by Biostar ♦♦ 20
18
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5
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198
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14 follow
5
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What is gene ontology exactly?
go written 5 weeks ago by nemo • 30 • updated 5 weeks ago by jrj.healey • 4.8k
2
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1
answer
136
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1
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agriGO no longer available?
agrigo go written 5 weeks ago by liamhawkinscu • 0 • updated 5 weeks ago by Philipp Bayer ♦ 5.5k
1
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1
answer
99
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1
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How to perform GO annotation? Or assign GO ontology to list of genes?
annotation go wego written 6 weeks ago by arsilan324 • 60 • updated 6 weeks ago by lieven.sterck • 1.9k
1
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1
answer
128
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1
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"GOplot" and problem with making an integrated matrix
R gene ontology microarray go plot written 6 weeks ago by farzaneafzali • 10 • updated 6 weeks ago by zx8754 ♦ 4.6k
12
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1
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2.2k
views
1
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Tool: clusterProfiler: an R package for comparing biological themes among gene clusters
tool kegg clusterprofiler R gsea go written 2.0 years ago by Guangchuang Yu • 1.9k • updated 6 weeks ago by pshubhamoy • 20
5
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4
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217
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6 follow
4
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Compare sets of GO enrichments
go written 3 months ago by grant.hovhannisyan • 900 • updated 6 weeks ago by Zhilong Jia • 1.4k
2
votes
2
answers
105
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2
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Filtering GO terms by neuromuscular processes
filter interactions disease go protein written 8 weeks ago by eudald.t • 10 • updated 7 weeks ago by jean.elbers • 290
0
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0
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98
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0
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I have few Differentially expressed miRNAs out of edgeR ?
enrichment analysis pathway analysis go mirnas written 11 weeks ago by Björn • 30
0
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0
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141
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0
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UBERON. A way to retrieve relationships?
gene expression homology uberon go ontology written 12 weeks ago by Solowars • 30
3
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2
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232
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2
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infer top level go category from GO:ID
gene ontology eggnog-mapper go written 3 months ago by Carambakaracho • 360 • updated 12 weeks ago by Vijay Lakhujani ♦ 2.7k
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154
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Gene ontology enrichment non model organism (doubts about the methods)
non-model organism enrichment go rna-seq written 12 weeks ago by pablo61991 • 40
0
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0
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114
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goProfiles for non-model organisms with GoTermsFrame
R goprofiles functional profile bioconductor go written 3 months ago by Maria Scheel • 0
0
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1
answer
151
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1
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Annotation Term Overrepresentation/Enrichment Analysis
annotation kegg go written 3 months ago by Benni • 20 • updated 3 months ago by n85825 • 0
1
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0
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268
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0
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What is the meaning of the level in groupGO Clusterprofiler ?
R gene ontology clusterprofiler go rna-seq written 3 months ago by GuriGuri1565 • 10
8
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3
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1.2k
views
3
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PCA on sample GO terms
meta analysis go pca microarray clustering written 2.3 years ago by gilagalad • 10 • updated 3 months ago by igor ♦ 6.3k
3
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1
answer
358
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1
answer
fastq to fasta conversion
fasta fastq go written 4 months ago by monicasteffi • 0 • updated 4 months ago by Vijay Lakhujani ♦ 2.7k
5
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1
answer
259
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1
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technical problem with R and GO terms
R go written 5 months ago by lessismore • 490 • updated 5 months ago by ATpoint • 5.5k
1
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1
answer
160
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1
answer
GO annotation filtering for BP
go filtering functional annotation written 5 months ago by lessismore • 490 • updated 5 months ago by lieven.sterck • 1.9k
5
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4
answers
915
views
5 follow
4
answers
Problem with topGO: GO term enrichment analysis
R bioconductor topgo go error written 11 months ago by cristian • 110 • updated 5 months ago by adnbps • 0
4
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0
answers
1.3k
views
8 follow
0
answers
News: GeneSCF (Gene Enrichment Tool): Advice to users
genescf news kegg go annotation written 18 months ago by EagleEye • 5.5k
1
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1
answer
671
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1
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How to do GSEA from gene profiles obtained from GEO
gene enrichment gsea go written 11 months ago by stewiegriffin • 0 • updated 6 months ago by Biostar ♦♦ 20
0
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3
answers
614
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3
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Adjusted P-value in GO analysis
p value gene ontology go written 6 months ago by DNA • 0 • updated 6 months ago by EagleEye • 5.5k
4
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0
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333
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0
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How to select tumor GO terms, if I did not find any in my biological process GO terms?
rnaseq go written 7 months ago by Tania • 120
41
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5
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13k
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19 follow
5
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Retrieve All Genes Associated With A Go Term
R bioconductor go gene-ontology written 5.9 years ago by enricoferrero • 740 • updated 7 months ago by EagleEye • 5.5k
4
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1
answer
566
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5 follow
1
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Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
R biomart go go.db written 7 months ago by lihaone • 10 • updated 7 months ago by Lluís R. • 690
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2.3k
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1
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The way to get the all p-value of functionally annotated categories from DAVID?
david go written 4.1 years ago by kim • 60 • updated 7 months ago by Biostar ♦♦ 20
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