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Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
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Comment: What does the 'E%' represent in BUSCO results?
Answer: What does the 'E%' represent in BUSCO results?
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Comment: How does gene length effect the number of reads mapped
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Comment: What does the 'E%' represent in BUSCO results?
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Philipp Bayer
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No worries! I found the commit with the maths too: https://gitlab.com/ezlab/busco/-/blame/master/src/busco/busco_tools/hmmer.py?page=2#L135…
Comment: What does the 'E%' represent in BUSCO results?
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林明德
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Thank you for your answer! It really helped me resolve a doubt!
Answer: What does the 'E%' represent in BUSCO results?
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Ah your edit solved this. 50 BUSCOs contain internal stop codons, indicating they might be erroneous gene models, or the genes themselves a…
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Comment: What does the 'E%' represent in BUSCO results?
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funny enough i tried the same thing (i've used BUSCO heaps times but never saw the E:! even the manual lists 'C:89.0%[S:85.8%,D:3.2%],F:6.9…
Comment: What does the 'E%' represent in BUSCO results?
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GenoMax
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According to ChatGPT: In BUSCO, the "E" category represents "End" or "Endof" gene fragments. These are orthologous groups for which the ge…
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Thank you for the link and details
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Thank you very much for helping with the details.
Comment: How does gene length effect the number of reads mapped
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thank you :)
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Those are SAM format fields. Check section 1.4 here: https://samtools.github.io/hts-specs/SAMv1.pdf > 1:2114:12111:13792 That is part of …
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