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Comment: How does FindNeighbors() and FindClusters() related and work?
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Answer: ggrepel function: geom_text_repel()
Comment: switch off warning in blast command line
Forward And Reverse Strand Conventions
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Recent Replies
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Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
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It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
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Pierre Lindenbaum
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there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
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Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
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egascon
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It's a microarryay experiment, not RNASeq
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https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
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I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
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Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input?
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LucisTheFather
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Would you be more specific to your question? Do you mean how to debug this syntax error?
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hophuquy0944
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thank you
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Tony
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I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
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The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
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Nyksubuz
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You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
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It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem
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saifulislam99121
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Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
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