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WGBS Data Analysis Related
next-gen sequencing written 1 hour ago by shrinka.genetics • 0 • updated 1 hour ago by RamRS ♦ 27k
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6 follow
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Which tool is best for getting genomic data analysis?
hail.is genome tools next-gen data-analysis written 15 hours ago by akshaykum684 • 0
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Forum: Advice for a start in Bioinformatics
R forum next-gen python written 19 hours ago by greesh.nk • 0
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How to swap the headers between fasta files ?
sequence next-gen sequencing written 20 hours ago by sankadinesh • 0 • updated 20 hours ago by yztxwd • 380
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1
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Drawing KEGG-type metabolic pathways
metabolic pathways drawing next-gen kegg written 8 days ago by zion22 • 40
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120
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1
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Calling CNVs in exomes - CLAMMS
exome next-gen clamms cnvs sequencing written 3 months ago by kath.a.fawcett • 0 • updated 2 days ago by lakhujanivijay ♦ 5.0k
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5 follow
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can I map multiple (>2) fastq reads against and assembly using bwa?
assembly next-gen sequence bwa alignment written 7 days ago by sa91 • 0 • updated 3 days ago by swbarnes2 ♦ 7.7k
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DEXSeq gives most of the reads as "_empty"
dexseq software error next-gen alignment rna-seq written 3 days ago by rohitsatyam102 • 90
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Bowtie Accuracy
read next-gen bowtie alignment written 7.8 years ago by Arpssss • 40 • updated 3 days ago by Biostar ♦♦ 20
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cuffdiff output table
assembly next-gen rna-seq R written 3 months ago by Balatheskulter • 0 • updated 4 days ago by Biostar ♦♦ 20
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44
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how to caculate insulation score in .hic file?
next-gen hic written 4 days ago by liulinli17m • 0
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42
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Annovar annotation with specific ENST region ( retain_intron exon)
next-gen rna-seq written 4 days ago by 9521ljh • 10
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45
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Alternative to PGDSpider for vcf conversion
vcf next-gen snp conversion memory written 5 days ago by QPaps04 • 0
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comprehensive assessment of isoform quantification accuracy from RNASeq data: How much it can be wrong?
genome assembly next-gen rna-seq genomics written 5.3 years ago by jack • 800 • updated 5 days ago by Jean-Karim Heriche ♦ 22k
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barplot is missing in png file after saving
software error R next-gen rna-seq gene written 6 days ago by qicaibiology • 40 • updated 6 days ago by Kevin Blighe ♦ 59k
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Alternative for taxa filter of Tassel
next-gen tassel snp written 7 days ago by manasakg16 • 0 • updated 6 days ago by Terry • 0
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News: Training in Molecular Modeling and Molecular Dynamics @NIH, July 21 - 24, 2020
news next-gen dynamics modeling rna-seq written 6 days ago by AABI • 120
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66
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1
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DNA barcode pair distance.
sequence assembly next-gen sequencing barcode written 6 days ago by Vinay Kusuma • 10
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Downloading canine annotation in Annovar for SNP detection possible?
next-gen snp sequencing written 6 days ago by rtyb91 • 20
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90
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How to find differential gene and expression analysis and novel transcripts?
next-gen rna-seq sequencing written 7 days ago by Manoj • 40
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TERF2 shRNA silencing is visible in WB and qPCR but not reflected in PE RNASeq
genome next-gen rna-seq written 7 days ago by rohitsatyam102 • 90
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How to get inserted bases using pysam pileup
next-gen alignment pysam bam written 8 days ago by va90 • 10
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ERROR Cuffmerge for differential gene and expression analysis?
next-gen rna-seq written 8 days ago by Manoj • 40
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82
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1
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Pooled sequencing DNA barcode space and deconvolution
genome gene next-gen sequence barcode written 8 days ago by Vinay Kusuma • 10 • updated 8 days ago by sysboolean • 40
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66
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News: Training in Statistical Analysis using R @NIH, July 8 - 10, 2020
r platform news next-gen biomedical statisticalanalysis written 9 days ago by AABI • 120
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Much less differentially expressed genes in DESeq2 than in EdgeR - is it common?
R next-gen written 10 days ago by Tatiana • 0 • updated 9 days ago by Kevin Blighe ♦ 59k
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Fst Calculation and Visualization
next-gen snp written 9 days ago by safiq713 • 0
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45
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How to add sex column while converting vcf file to .ped and .map format
software error next-gen snp written 9 days ago by wubalem • 0
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57
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1
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Read Mapping with BWA mem with a bunch of files
next-gen written 10 days ago by zhaoenid • 0 • updated 10 days ago by ATpoint ♦ 34k
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Any tools for nucleosome phasing analysis of ATAC-Seq data?
next-gen atac-seq nucleosome written 10 days ago by srhic • 0
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