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1
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1
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67
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1
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PacBio amplicon sequencing
genome assembly next-gen sequencing written 1 day ago by williamsbrian5064 • 40 • updated 2 hours ago by colindaven • 580
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68
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junction.bed output files from tophat
next-gen written 23 hours ago by blooming.daisy333 • 0 • updated 23 hours ago by WouterDeCoster ♦ 27k
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63
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Bioinformatics Project this summer
gene genome next-gen rna-seq sequencing written 1 day ago by shruti.singh.4431 • 0
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1
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59
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1
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I want to visualize with GenVisR, do I have to use GenomeModelingTools to annotate things?
genome R next-gen snp written 2 days ago by FallingBabyEagle • 0 • updated 1 day ago by m_two • 0
4
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1
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61
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1
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Uneven Datasets Deseq2 how to fix factor(rep(c("A","B"),each=3))?
R next-gen rna-seq assembly written 1 day ago by williamsbrian5064 • 40
1
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2
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78
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2
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How to extract forward and reverse primer coordinates for soft clipping?
next-gen written 2 days ago by bioinfo89 • 0 • updated 1 day ago by WouterDeCoster ♦ 27k
4
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1
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117
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1
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How to calculate average depth for each Amplicon in targeted amplicon sequencing?
bedtools next-gen written 2 days ago by bioinfo89 • 0 • updated 2 days ago by Pierre Lindenbaum ♦ 106k
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1
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491
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1
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problem kraken build standard database
software error alignment metagenomic next-gen written 11 months ago by david.christiany • 0
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How to generate a .sam/.bam file of a particular chromosome or even a particular region?
genome next-gen alignment written 3.4 years ago by Chenglin • 90 • updated 2 days ago by gsr9999 • 60
48
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4
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11k
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22 follow
4
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VCF files: Change Chromosome Notation
sequence next-gen written 4.0 years ago by Quak • 260 • updated 2 days ago by seeholzer • 0
5
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2
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109
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5 follow
2
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fastq file split in chromosome
next-gen written 3 days ago by blooming.daisy333 • 0 • updated 2 days ago by Bastien Hervé • 540
8
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1
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67
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5 follow
1
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Tophat tool error
next-gen written 3 days ago by blooming.daisy333 • 0 • updated 3 days ago by WouterDeCoster ♦ 27k
0
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1
answer
66
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1
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GATK current version downloading fails
software error gene next-gen sequencing written 3 days ago by shuksi1984 • 10 • updated 3 days ago by zhenyisong • 120
1
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86
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Job: Postdoc in Computational Cancer Genomics at University of Minnesota
next-gen chip-seq job rna-seq written 3 days ago by yang4414 • 10
0
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0
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143
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0
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StringTie Error regarding GFT file
software error assembly next-gen rna-seq written 7 weeks ago by williamsbrian5064 • 40 • updated 3 days ago by Biostar ♦♦ 20
0
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1
answer
280
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1
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Analysing RNA-seq data and whole genome bisulfite seq data on same tissues (multi-read out sequencing data)
bisufite-seq next-gen rna-seq sequencing written 6 months ago by cjgunase • 20 • updated 4 days ago by davichen • 0
0
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1
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343
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1
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Removing Duplicates for Variant calling when using genes as a reference?
gene next-gen snp sequencing written 6 months ago by DR • 10 • updated 5 days ago by Biostar ♦♦ 20
0
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1
answer
72
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1
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Prefetch command is not able to download sra file
software error next-gen sequence sequencing written 5 days ago by patanjal • 0 • updated 5 days ago by Carambakaracho • 110
4
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1
answer
139
views
1
answer
Remove singletons from bam
next-gen sequencing written 10 days ago by banerjeeshayantan • 40 • updated 5 days ago by Ram ♦ 14k
0
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0
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77
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0
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Validating driver genes
next-gen rna-seq written 5 days ago by banerjeeshayantan • 40
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71
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0
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News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
bioinformatics news next-gen training seq-data written 5 days ago by AABI • 90
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1
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70
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1
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GATK error while performing WES for the HG100 downloaded from 1000genomes
genome next-gen sequencing written 6 days ago by shuksi1984 • 10 • updated 6 days ago by Pierre Lindenbaum ♦ 106k
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2
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67
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2
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What to do to identify rare variatns from vcf files resulted from UnifiedGenotyper?
next-gen written 6 days ago by thejustpark • 60 • updated 6 days ago by rse • 40
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66
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Job: Post-doctoral position, U of Kansas (Lawrence), developing Bioconductor package for linear modeling of RNA-seq for dosage compensation analysis
R next-gen job rna-seq written 6 days ago by jamie.r.walters • 0
0
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1
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102
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1
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Variants and Allele Counts
next-gen sequence snp variants written 8 days ago by patrick.mackay • 0
2
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0
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60
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0
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Whole genome sequence isolates
genome next-gen snp sequencing written 6 days ago by miir4biotech • 10
0
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0
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473
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0
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MToolBox VCF output error
software error next-gen snp written 17 months ago by waqasnayab • 150 • updated 6 days ago by Biostar ♦♦ 20
1
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0
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65
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0
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SRA tootkit to download pileup formats using SRR accessions
sratoolkit next-gen pileup sequencing written 6 days ago by Paul • 50
5
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1
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90
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1
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removal of spesific read from fastq file
next-gen written 7 days ago by blooming.daisy333 • 0
0
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1
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70
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1
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Tumor grade from miRNA data set from TCGA database
genome next-gen rna-seq written 7 days ago by skjobs1234 • 0 • updated 7 days ago by noorpratap.singh • 90
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