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News: Phylogenomics course in Berlin
news next-gen snp written 1 hour ago by carlopecoraro2 • 910
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How to download SNPedia database or data dump
genome gene next-gen genotype snp written 7 hours ago by pup-ccmb • 0
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HISAT2 index build: what to do for SNPs with >1 alt alleles
alignment next-gen snp written 14 hours ago by msg • 0
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reporting the best alignment(s) only in pairwise2
next-gen alignment sequencing written 3.8 years ago by sumithrasank75 • 120 • updated 1 day ago by Biostar ♦♦ 20
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Job: Postdoctoral position in regulation of stem cell biology, Yale University
R next-gen job single cell postdoc written 1 day ago by josien • 0
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Pool of Normals- PureCN
next-gen sequencing written 3 days ago by sruthi • 0 • updated 2 days ago by markus.riester • 320
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PureCN: Estimating tumor purity and ploidy
next-gen sequencing written 10 days ago by sruthi • 0
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Is there a tool that filters a sam/bam file by the following: (1) similarity score; (2) length fraction?
alignment next-gen rna-seq sequencing written 3 days ago by O.rka • 80
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5 follow
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basic experimental methods book for bioinformaticians
next-gen rna-seq written 3 days ago by Pappu • 1.9k
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7 follow
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Minor allele frequency calculation
next-gen snp written 4.3 years ago by Tark • 50 • updated 3 days ago by pltbiotech_tkarthi • 100
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UMI Tools Dedup
bioinformatics next-gen umitools rna-seq written 3 days ago by rajpal22288 • 0 • updated 3 days ago by i.sudbery ♦ 4.0k
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5 follow
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edgeR - DE with one disease sample vs. multiple control samples?
R next-gen rna-seq sequencing written 4 days ago by RafaelMP • 110 • updated 4 days ago by Gordon Smyth • 620
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Tools to calculate directionality index
R next-gen written 25 days ago by h.long • 30 • updated 4 days ago by Biostar ♦♦ 20
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Interesting Bioinformatics Project Ideas (NGS, RNA-Seq)
genome sequence next-gen rna-seq written 5 days ago by elia.brodsky • 300 • updated 5 days ago by mohanrawat73 • 0
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News: OmicsLogic Online Bioinformatics Program (March 2019) has started
genome news next-gen rna-seq written 5 days ago by elia.brodsky • 300
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How to merge read count of multiple sample in one fiel to be used for DESeq2 fold change study?
alignment next-gen rna-seq sequencing written 4 weeks ago by Neu • 10 • updated 5 days ago by gayatri281 • 0
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SSPACE-LongRead, PBjelly2 and OPERA-LG comparison
genome assembly next-gen scaffolding pacbio written 17 months ago by gabri • 50 • updated 5 days ago by SMK • 50
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Best tool for quality trimming at 5 prime?
next-gen quality-control sequencing written 5 days ago by crespialba • 10
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Job: Global Bioinformatics Manager - Horizon Discovery, Lafayette Colorado
next-gen sirna job rna-seq crispr gene editing written 5 days ago by shawn.mek • 10
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Run Delly by chromosome
next-gen structural variant discovery delly bwa written 7 days ago by tg25 • 0
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Error when using deML with dual indexed paired end sequencs
deml sequencing next-gen demultiplexing written 5 months ago by drunva • 0 • updated 6 days ago by Gabriel R. • 2.6k
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How to compile a list of non-cancerous mutations
sequencing next-gen cancer written 6 days ago by banerjeeshayantan • 80
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subset sample in phyloseq
R next-gen written 6 days ago by Bioinfonext • 130 • updated 6 days ago by genomax ♦ 63k
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Questions from beginner: Barcode of Single cell RNA-seq
next-gen rna-seq sequencing written 7 days ago by SDin • 0
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How do I perform MSI detection on fastq format libraries?
next-gen cancer msi rna-seq sequencing written 7 days ago by mandhirsikander • 0
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the peaks of ChIPseq are few
next-gen chip-seq call peak written 9 days ago by Francis • 10 • updated 7 days ago by Friederike ♦ 3.2k
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Job: Postdocs/Scientists @ New York City: Long Reads, Epigenomes and Human Diseases
genome epigenetics next-gen job rna-seq written 9 days ago by fanggang • 70
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rMATS 4.0.2 (turbo) error when running the statistical part
software error splicing next-gen rna-seq written 13 days ago by Ivó Hernández Hernández • 10
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Error in phyloseq command
software error next-gen written 9 days ago by Bioinfonext • 130 • updated 9 days ago by ATpoint ♦ 14k
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how to identify degenerate primers in reads
next-gen written 9 days ago by genya35 • 10
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