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6
votes
1
answer
131
views
1
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how to trim only the quality scores in fastq file
next-gen sequencing written 8 weeks ago by vp • 0 • updated 6 hours ago by Biostar ♦♦ 20
3
votes
0
answers
159
views
0
answers
How to find upregulated and downregulated genes for my microarray data with limma
R next-gen chip-seq microarray rna-seq written 2 days ago by koushik.vf09 • 10 • updated 2 days ago by Kevin Blighe ♦ 51k
0
votes
0
answers
77
views
0
answers
Unable to convert txt to gtf format
python next-gen written 2 days ago by rajpal22288 • 0
1
vote
1
answer
67
views
1
answer
counting the number of reads in FASTQ files
next-gen coverage sequencing written 2 days ago by Ric • 280 • updated 2 days ago by swbarnes2 ♦ 7.0k
1
vote
1
answer
57
views
1
answer
DNAcopy plot error
R cnv analysis next-gen sequencing written 2 days ago by sunilpachakar • 0 • updated 2 days ago by genomax ♦ 74k
5
votes
0
answers
133
views
0
answers
Genome size estimation using Kmergenie
genome assembly next-gen sequencing written 5 weeks ago by Rahul • 30 • updated 2 days ago by Biostar ♦♦ 20
1
vote
0
answers
77
views
0
answers
Ho to assembly MiSeq reads from BAC clones into a contig in fasta format?
assembly bac library next-gen sequencing written 3 days ago by alebesc • 0 • updated 3 days ago by genomax ♦ 74k
0
votes
1
answer
522
views
1
answer
how to make query list and reference list of genome in fastANI tool
genome software error next-gen alignment assembly written 17 months ago by biotechpedia • 0 • updated 3 days ago by Nay Catina Dia • 0
3
votes
0
answers
79
views
0
answers
Why map reads back to assembly?
sequence assembly next-gen alignment written 4 days ago by macielrodriguez2 • 20
0
votes
0
answers
55
views
0
answers
SnpEff question for Variant annotation
gene vcf next-gen snpeff written 4 days ago by mandar.bedse • 0 • updated 4 days ago by Pierre Lindenbaum ♦ 124k
0
votes
0
answers
39
views
0
answers
select reference mir from NGS data
mirrna next-gen rna-seq written 5 days ago by ystokar • 0
6
votes
2
answers
96
views
7 follow
2
answers
is there any database that show RNA false positive?
next-gen rna-seq sequencing written 8 days ago by 9521ljh • 10 • updated 5 days ago by kristoffer.vittingseerup • 2.6k
0
votes
0
answers
46
views
0
answers
News: 5th edition of the POPULATION GENOMICS course in Berlin
genome R news next-gen bioinformatics written 6 days ago by carlopecoraro2 • 1.2k
2
votes
2
answers
135
views
2
answers
Annotating dbnsfp by SnpSift on a cluster
snpsift annotation next-gen dna-seq dbnsfp written 4 weeks ago by kanika.151 • 80
3
votes
0
answers
185
views
0
answers
is it code is python + bash .....and what is this AssignGenes.py ?
assembly next-gen rna-seq sequencing written 18 days ago by lal • 0
1
vote
2
answers
105
views
2
answers
Trainning on NGS
next-gen written 8 days ago by jahanshanzida • 0 • updated 8 days ago by Leite • 890
0
votes
0
answers
51
views
0
answers
Ploidy of genome assembled from PacBio reads
genome next-gen pacbio ploidy written 8 days ago by ambarishnag • 0
0
votes
0
answers
458
views
0
answers
MG-RAST download by job ids.
genome sequence ngs next-gen metagenome written 16 months ago by Dattatray Mongad • 340 • updated 9 days ago by Biostar ♦♦ 20
0
votes
1
answer
73
views
1
answer
Variant Annotation and prioritization
next-gen sequence written 9 days ago by mandar.bedse • 0 • updated 9 days ago by Vitis • 2.3k
321
votes
12
answers
112k
views
165 follow
12
answers
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel tools next-gen ngs tool written 6.8 years ago by ole.tange • 3.6k
0
votes
1
answer
44
views
1
answer
How to generate the svg format from the resutls in krona.html?
sequencing krona next-gen svg written 9 days ago by dymphan.17phd • 0 • updated 9 days ago by Pierre Lindenbaum ♦ 124k
0
votes
1
answer
63
views
1
answer
What aligners to choose between Hisat2 and BWA for chip-SEQ analysis
alignment next-gen chip-seq written 10 days ago by Molinia • 0 • updated 10 days ago by ATpoint ♦ 25k
0
votes
0
answers
59
views
0
answers
What does "Infinity" QUAL values mean in VCF files
vcf next-gen written 10 days ago by elcortegano • 10
3
votes
0
answers
94
views
0
answers
creating gtf file for bam file generated by Hisat2 using Stringtie
gene assembly next-gen rna-seq R written 13 days ago by selkash2016 • 0
0
votes
1
answer
105
views
1
answer
how to merge individual vcf to reference genome using python script.
gene assembly next-gen alignment genome written 10 days ago by ahmadpir40 • 0 • updated 10 days ago by Amar • 440
3
votes
2
answers
1.4k
views
2
answers
Paired-end RNA sequence - which read is complimentary?
gene next-gen sequence rna-seq written 3.8 years ago by yanweng • 30 • updated 11 days ago by Biostar ♦♦ 20
1
vote
0
answers
96
views
0
answers
Sequencing on Novaseq 6000 in the UK
next-gen sequencing written 11 days ago by sal.roberts124 • 10 • updated 11 days ago by genomax ♦ 74k
0
votes
0
answers
52
views
0
answers
Gene names from gene ids for Pisum Sativum
gene assembly next-gen rna-seq sequencing written 11 days ago by kethavatsrinivas • 0
2
votes
1
answer
69
views
1
answer
Raw reads from Ion Torrent. Is it single-end reads or paired-end reads.
genome assembly next-gen sequencing written 11 days ago by eudaims • 0
0
votes
1
answer
154
views
1
answer
Extract genes sequence from .gb file
gene genome next-gen sequence written 10 weeks ago by masterbiotechnology2 • 0 • updated 12 days ago by Juke-34 • 2.9k
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