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10
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Bacterial reads in ATAC-seq
next-gen sequencing written 58 minutes ago by C4 • 0
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24
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Is there a stagewise testing procedure for DESeq2?
R next-gen rna-seq sequencing written 2 hours ago by Jay-Run • 0
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0
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22
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0
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Fungal database or gene catalog
genome gene next-gen rna-seq sequencing written 5 hours ago by xie.zixuan • 0
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1
answer
30
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1
answer
Split reads (fastq) x read barcode sequence (no barcode in RG)
next-gen sequence written 11 hours ago by emmanouil.a • 20 • updated 6 hours ago by genomax ♦ 92k
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75
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Which step that we can increase the Sequencing quantity in the RNA-seq?
next-gen rna-seq written 19 hours ago by 972050141 • 0
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39
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0
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Software/packages for analyzing differential isoforms from RNA-seq data?
next-gen rna-seq sequencing written 1 day ago by Kai_Qi • 100
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56
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Job: 2 postdoc positions
genome next-gen job snp written 1 day ago by a1mauno • 10
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0
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45
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0
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Normalization of RNA-Seq gene expression values between several GSEs
gene R next-gen rna-seq sequencing written 1 day ago by qstefano • 0
89
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7
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60k
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57 follow
7
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How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 6.4 years ago by krithika.gu • 280 • updated 1 day ago by Pierre Lindenbaum ♦ 131k
2
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0
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69
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0
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High mapping on chromosome M in RNA-seq data
next-gen rna-seq written 1 day ago by Jay-Run • 0
6
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1
answer
79
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1
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samtools index cannot index concatenated bam?
alignment next-gen rna-seq written 1 day ago by Kai_Qi • 100 • updated 1 day ago by swbarnes2 ♦ 9.2k
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47
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0
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t2g.py tconversion of ranscript to gene name text file is returning empty file
next-gen alignment rna-seq sequencing written 1 day ago by makwana.kd • 30
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answers
32
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0
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GATK_SplitNCigarReads output size is empty
next-gen rna-seq written 1 day ago by JackShao • 0
0
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0
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37
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0
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Downstream analysis on multi-sample or single-sample VCF files?
filtration vcf next-gen written 2 days ago by NGSCanBioinf • 10
3
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1
answer
49
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1
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How to obtain unspliced tRNAs from FASTQ file
next-gen rna-seq unspliced trna written 2 days ago by nkabo • 50 • updated 2 days ago by swbarnes2 ♦ 9.2k
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73
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0
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Job: Senior Bioinformatician at Biomage
R next-gen job rna-seq written 2 days ago by vicky • 0
1
vote
0
answers
40
views
0
answers
SnpSift case control command for multiple samples
snpsift casecontrol next-gen snp rna-seq written 2 days ago by kumari.indu31 • 0
3
votes
0
answers
93
views
0
answers
Knock out genes and TPM
gene alignment next-gen rna-seq gene knock outs written 3 days ago by simang5c • 10
1
vote
0
answers
48
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0
answers
diffrence between GEO Profiles and GEO Dataset
next-gen rna-seq sequencing written 4 days ago by askari.arezou94 • 30
0
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0
answers
54
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0
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Labeled Single-Cell RNA Seq Dataset
gene next-gen written 4 days ago by fahidahmad1060 • 0
0
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0
answers
35
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0
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How to visulize bed6 file generated from Pureclip analysis
next-gen rna-seq sequencing written 4 days ago by Kai_Qi • 100
1
vote
1
answer
91
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1
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"No samples found with any adapter contamination > 0.1%" Is adapter-trimming still necessary?
next-gen rna-seq written 4 days ago by Jay-Run • 0 • updated 4 days ago by genomax ♦ 92k
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43
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0
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Real time pcr/qPCR primers specificity
gene next-gen written 5 days ago by muhindi_stephen • 0
0
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0
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134
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0
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Can't load reference sequence from file 'GRCh37.fa': Unexpected character 'M' found.
next-gen rna-seq sequencing written 5 days ago by Kai_Qi • 100
0
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2
answers
73
views
2
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How to visualize MAGs
R next-gen metagenome written 6 days ago by ellenphante • 0 • updated 5 days ago by gamamiguelangel • 0
0
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0
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87
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0
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Filtering uniquely mapping reads from bam files generated from STAR
next-gen chip-seq rna-seq written 5 days ago by Kai_Qi • 100
1
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0
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73
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0
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CD-HIT fatal error
software error assembly next-gen sequencing written 7 days ago by a.mostafa5050 • 0
0
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0
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57
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0
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tool for calculate tumor-only sample purity of wgs or wes
genome next-gen written 6 days ago by linouhao • 0
6
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2
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1.3k
views
6 follow
2
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TPM or FPKM for single cell RNA seq experiment ?
gene next-gen rna-seq written 13 months ago by annaA • 10 • updated 6 days ago by Biostar ♦♦ 20
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53
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0
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Issue customizing Freebayes variant calling using -@ flag
next-gen freebayes variant caller snp written 6 days ago by lexic2713 • 10
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