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Positive selection population identification using xpehh

xpehh R rehh selective sweep population genetics written 4 months ago by devarora • 240

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The same loci for XP-EHH by Selscan

xpehh selscan plink written 2.2 years ago by Victor • 10

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Interpreting XPEHH output

genome xpehh snps selection haplotype written 6.6 years ago by Rubal • 330 • updated 6.6 years ago by Zev.Kronenberg ♦ 11k

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Recent Replies

C: trackplot: Fast and minimal dependency standalone R script to generate IGV style by poisonAlien • 2.9k
You are almost there. You just need to copy/move the binary to a `PATH` (e.g; `/usr/local/bin`) o...
C: How to check mitochondrial reference in GWAS data for HaploGrep analysis by haansi • 80
Hi! This sounds good, great to hear that. When you run haplogrep with the chip flag, the scores ...
C: ASMap for the qtl/r data by kandeldr79 • 0
I am having the exact same issue working with f2 gbs data in R/qtl to ASMap importing. After conv...
C: Illumina HumanHT-12 V3.0 expression beadchip reading data by vipulwagh31 • 0
Sure I will do that. Thank you once again.
C: Scanning for TFBSs of known motifs in all human promoters by hari_iyer16 • 10
Great. Thank you Alex for the wonderful writeup.
C: trackplot: Fast and minimal dependency standalone R script to generate IGV style by Sael • 20
Problem solved using: git clone https://github.com/CRG-Barcelona/libbeato.git git clone...
C: Script bash to split columns by _r_am ♦ 31k
How does this help OP? `column` formats content for display, it does nothing to split or manipula...
C: Mutual Information from Nucleotide Distribution in Python by _r_am ♦ 31k
Hello nameuser, Do not redact content after you've received feedback on a post. This is inconsid...
C: Scanning for TFBSs of known motifs in all human promoters by Alex Reynolds ♦ 31k
See: https://www.biostars.org/p/473952/#473984
C: Why does annotate give an error? by mohamadrezakeshtkar • 0
Do you mean to add to the PATH for all files that are "not found"?
C: Scanning for TFBSs of known motifs in all human promoters by hari_iyer16 • 10
Hi Alex. Incidentally I was facing a similar issue and liked your solution. However, I was wonder...
C: Empty output when use HOMER annotatePeak.pl by mohamadrezakeshtkar • 0
**How did you solve the problem? I have a problem here too** [enter link description here][1] ...

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