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Script for XP-EHH, EHH and iHS tests and phasing vcf file that works on all chromosome concurrently

xpehh wgs ihs pooled-seq ehh written 4 days ago by taniamahmood38 • 20

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155

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Positive selection population identification using xpehh

xpehh R rehh selective sweep population genetics written 7 months ago by devarora • 330

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600

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The same loci for XP-EHH by Selscan

xpehh selscan plink written 2.5 years ago by Victor • 10

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Interpreting XPEHH output

genome xpehh snps selection haplotype written 6.9 years ago by Rubal • 340 • updated 6.9 years ago by Zev.Kronenberg ♦ 11k

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C: R script for loading .CEL.gz files in afffy package by raavi21198 • 0
Okay Sir. Thank you so much. will make changes as mentioned.
A: R script for loading .CEL.gz files in afffy package by Mensur Dlakic • 9.2k
The question seems pretty clear: > Is /home/eshwari/Documents/GSE120356/GSM3398822_N1.CEL.gz ...
A: How to convert gvcf file to normal vcf file ? by devarora • 330
This `gatk GenotypeGVCFs -R $reference --variant s1_genomevcf.gz -O s1.vcf` look fine but you can...
C: I cannot open jalview on linux by cpad0112 ♦ 15k
Can you try uninstalling other lower versions of openJDK from your system? Please make sure that ...
C: BEAST and BEAGLE installed using conda environment, how to connect? by cpad0112 ♦ 15k
please post location of executable.
A: BEAST and BEAGLE installed using conda environment, how to connect? by ms.madise95 • 0
You can run Beast with Beagle by showing the location of the library of the installed environment...
C: Genome sequence upload from NCBI in galaxy for RNA-seq data analysis by GenoMax ♦ 96k
I don't think you can directly paste links for NCBI datasets in Galaxy to download the data. Ple...
C: GO annotation for zebrafish by aranyak111 • 0
Thanks for the feedback. I have been able to obtain GO annotations for the zebrafish I was lookin...
C: snpEff inappropriate interpretation of variants? by trutane • 40
The structural_interaction_variant is described in the "[Protein interaction effects][1]" section...
C: Annotation with KEGGrest by rpolicastro ♦ 4.1k
Your edits look good, so I'll open the post.
C: Violation of Independence test for differential methylation (DM) by CY • 560
Thanks for explaining. But when a single CpG site was tested, the contingency table sums up the (...
C: GO annotation for zebrafish by GenoMax ♦ 96k
https://www.biostars.org/u/82547/ : Please validate answers (green check mark) /comments for your...

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