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The same loci for XP-EHH by Selscan

xpehh selscan plink written 21 months ago by Victor • 10

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Interpreting XPEHH output

genome xpehh snps selection haplotype written 6.2 years ago by Rubal • 310 • updated 6.2 years ago by Zev.Kronenberg ♦ 11k

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C: Want to create a new Index file for BAM using SAMTOOLS. Do I need to sort the de by Umesh • 0
![enter image description here][1]I've uploaded the result which i get after the command, but i a...
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I would look into the concept called transcript integrity (TIN) to evaluate how well do the reads...
C: meaning of CheckM output by zhangdengwei • 60
Asaf, may I ask one more question? What's the meaning of `Marker lineage`? Based on my understand...
C: Definition of + and - strands for human genome by genomax ♦ 85k
See: https://www.biostars.org/p/3908/
C: UCSC Xena Probe to Gene mapping by RamRS ♦ 27k
I’ve found that in many cases where a single ENSG ID corresponds to multiple HGNC symbols, only o...
C: Definition of + and - strands for human genome by RamRS ♦ 27k
Check out this Wikipedia entry (the first result in googling “plus strand”): https://en.wikipedia...
C: Converting Gene Symbol to Ensembl ID in R by Harry_Wat • 0
Thank you very much!
C: Want to create a new Index file for BAM using SAMTOOLS. Do I need to sort the de by Pierre Lindenbaum ♦ 129k
From the 1st screenshot, I suspect you're using the wrong fasta reference . ![enter image desc...
A: igvtools count | wigToBigWig, pipe not working for some reason although stdout a by Pierre Lindenbaum ♦ 129k
try: igvtools count -w 10 -f median $file stdout hg19 | grep -v "Using system JDK" | wigToBi...
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Ok thanks. What about using the median as the cut-off point? This is because with the previous cu...
C: RPKM for multi-copy genes by poltora4enko • 10
ILLUMINA (NextSeq 550). data - PROseq PAIRED. Source: TRANSCRIPTOMIC I have Drosophila rDNA gen...
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I have found that the easiest input format for VEP is tabular pseudo-VCF: You can separate each ...

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