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Need to specify "--chemistry" argument in "cellranger count"
cellranger-count cellranger
updated 2.5 years ago by ★ 1.9k • written 3.8 years ago by ▴ 30
0
votes
1
reply
970
views
Best software to analyze Novogene bulk RNA-seq
RNA-seq bulk
updated 2.9 years ago by 89k • written 2.9 years ago by ▴ 30
0
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3
replies
11k
views
Trouble setting "ident" argument in FindMarkers in Seurat
Seurat FindMarkers
updated 3.1 years ago by ▴ 190 • written 3.8 years ago by ▴ 30
0
votes
1
reply
982
views
How best to choose receptors to target when planning a lipid nanoparticle project
nanoparticles rna-seq
updated 3.2 years ago by 9.0k • written 3.2 years ago by ▴ 30
0
votes
1
reply
849
views
RNA-seq data from human patients with both GBM and Alzheimer's
alzheimers rna-seq gbm
updated 3.2 years ago by ▴ 430 • written 3.2 years ago by ▴ 30
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0
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458
views
Recurrent human GBM single-cell RNA-seq data
rna-seq gbm
3.2 years ago by Aaron ▴ 30
0
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0
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431
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single-cell Alzheimer's data from studies involving anti-herpetic drugs
alzheimers single-cell
3.3 years ago by Aaron ▴ 30
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0
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9.6k
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Comment: Comment: scRNAseq analysis - h5ad file conversion to Seurat format
3.3 years ago by Aaron ▴ 30
0
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0
replies
549
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Inferring tumor mutational burden from RNA-seq data
tumor burden mutational rna-seq
3.3 years ago by Aaron ▴ 30
0
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0
replies
983
views
Comment: Comment: Cytokine/ Growth factor responsive gene list
3.4 years ago by Aaron ▴ 30
0
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1
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1.3k
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Comment: Comment: Identifying individual amino acids or domains in Alphafold predictions
3.4 years ago by Aaron ▴ 30
2
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3
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1.3k
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Identifying individual amino acids or domains in Alphafold predictions
Alphafold
updated 3.4 years ago by ★ 30k • written 3.4 years ago by ▴ 30
0
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0
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554
views
scRNA-seq accurately captures expression of mitochondrial genes in neurons?
scRNA-seq
3.4 years ago by Aaron ▴ 30
0
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0
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4.1k
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Comment: Comment: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
3.8 years ago by Aaron ▴ 30
9
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3
replies
4.1k
views
Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
Nebulosa Seurat plot_density
3.8 years ago by Aaron ▴ 30
0
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0
replies
908
views
Trouble running FindConservedMarkers() after using CellSelector() in Seurat
FindConservedMarkers Seurat
3.8 years ago by Aaron ▴ 30
0
votes
0
replies
820
views
Trouble running Seurat's FindConservedMarkers()
FindConservedMarkers Seurat
3.8 years ago by Aaron ▴ 30
8
votes
5
replies
6.1k
views
Annotating UMAP clusters in Seurat with SingleR
Seurat SingleR Scran UMAP annotating-clusters
updated 3.8 years ago by 89k • written 3.8 years ago by ▴ 30
0
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0
replies
6.1k
views
Comment: Comment: Annotating UMAP clusters in Seurat with SingleR
3.8 years ago by Aaron ▴ 30
0
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0
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3.5k
views
Comment: Comment: Cellranger counts: how to set the value for "--expect-cells" if you can't guess
3.8 years ago by Aaron ▴ 30
2
votes
4
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3.5k
views
Cellranger counts: how to set the value for "--expect-cells" if you can't guess
cellranger-counts cellranger
3.8 years ago by Aaron ▴ 30
0
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0
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2.7k
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Comment: Comment: Trouble getting IntegrateData to include specified features in Seurat
3.8 years ago by Aaron ▴ 30
0
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1
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2.7k
views
Comment: Comment: Trouble getting IntegrateData to include specified features in Seurat
3.8 years ago by Aaron ▴ 30
2
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4
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2.7k
views
Trouble getting IntegrateData to include specified features in Seurat
Seurat IntegrateData
3.8 years ago by Aaron ▴ 30
0
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0
replies
2.3k
views
Comment: Comment: Forcing Seurat to include certain genes during integration
3.8 years ago by Aaron ▴ 30
8
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4
replies
2.3k
views
Forcing Seurat to include certain genes during integration
Integration Seurat
3.8 years ago by Aaron ▴ 30
1
vote
1
reply
1.6k
views
Controlling for mouse and human cell-cycle aspects of data simultaneously in Seurat
PDX Seurat CellCycleScoring
updated 3.8 years ago by ★ 19k • written 3.8 years ago by ▴ 30
0
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0
replies
1.5k
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Comment: Comment: Separating gene expression data from human tumor and model organism in RNA-seq a
3.8 years ago by Aaron ▴ 30
2
votes
2
replies
1.5k
views
Separating gene expression data from human tumor and model organism in RNA-seq analysis
PDX-models Seurat
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 30
0
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0
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3.3k
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Comment: Comment: List of cell cycle markers to use as reference in CellCycleScoring() in Seurat
3.8 years ago by Aaron ▴ 30
2
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3
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3.3k
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List of cell cycle markers to use as reference in CellCycleScoring() in Seurat
Seurat CellCycleScoring
3.8 years ago by Aaron ▴ 30
0
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1
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3.5k
views
Comment: Comment: Cellranger counts: how to set the value for "--expect-cells" if you can't guess
3.8 years ago by Aaron ▴ 30
0
votes
0
replies
918
views
Difference between "--solostrand" and "--readstrand" commands in STARsolo
STARsolo
3.8 years ago by Aaron ▴ 30
5
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2
replies
4.0k
views
Improving my STARsolo results
STARsolo
updated 3.8 years ago by ▴ 40 • written 3.8 years ago by ▴ 30
1
vote
3
replies
2.6k
views
Telling apart control and treatment groups in Seurat Visualizations
Visualizations Seurat Data
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 30
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