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Comment: Comment: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
3 months ago by Aaron ▴ 10
6
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3
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557
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Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
Nebulosa Seurat plot_density
3 months ago by Aaron ▴ 10
0
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0
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177
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Trouble running FindConservedMarkers() after using CellSelector() in Seurat
FindConservedMarkers Seurat
3 months ago by Aaron ▴ 10
0
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0
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183
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Trouble running Seurat's FindConservedMarkers()
FindConservedMarkers Seurat
4 months ago by Aaron ▴ 10
7
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5
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719
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Annotating UMAP clusters in Seurat with SingleR
Seurat SingleR Scran UMAP annotating-clusters
updated 4 months ago by 60k • written 4 months ago by ▴ 10
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0
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719
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Comment: Comment: Annotating UMAP clusters in Seurat with SingleR
4 months ago by Aaron ▴ 10
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0
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1.1k
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Comment: Comment: Cellranger counts: how to set the value for "--expect-cells" if you can't guess
4 months ago by Aaron ▴ 10
2
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4
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1.1k
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Cellranger counts: how to set the value for "--expect-cells" if you can't guess
cellranger-counts cellranger
4 months ago by Aaron ▴ 10
0
votes
1
reply
482
views
Trouble setting "ident" argument in FindMarkers in Seurat
Seurat FindMarkers
updated 4 months ago by ▴ 190 • written 4 months ago by ▴ 10
0
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0
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556
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Comment: Comment: Trouble getting IntegrateData to include specified features in Seurat
4 months ago by Aaron ▴ 10
0
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1
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556
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Comment: Comment: Trouble getting IntegrateData to include specified features in Seurat
4 months ago by Aaron ▴ 10
2
votes
4
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556
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Trouble getting IntegrateData to include specified features in Seurat
Seurat IntegrateData
4 months ago by Aaron ▴ 10
0
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0
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472
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Comment: Comment: Forcing Seurat to include certain genes during integration
4 months ago by Aaron ▴ 10
8
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4
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472
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Forcing Seurat to include certain genes during integration
Integration Seurat
4 months ago by Aaron ▴ 10
1
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1
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533
views
Controlling for mouse and human cell-cycle aspects of data simultaneously in Seurat
PDX Seurat CellCycleScoring
updated 4 months ago by ★ 13k • written 4 months ago by ▴ 10
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0
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326
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Comment: Comment: Separating gene expression data from human tumor and model organism in RNA-seq a
4 months ago by Aaron ▴ 10
2
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2
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326
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Separating gene expression data from human tumor and model organism in RNA-seq analysis
PDX-models Seurat
updated 4 months ago by 8.1k • written 4 months ago by ▴ 10
0
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0
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530
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Comment: Comment: List of cell cycle markers to use as reference in CellCycleScoring() in Seurat
4 months ago by Aaron ▴ 10
2
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3
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530
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List of cell cycle markers to use as reference in CellCycleScoring() in Seurat
Seurat CellCycleScoring
4 months ago by Aaron ▴ 10
0
votes
1
reply
559
views
Need to specify "--chemistry" argument in "cellranger count"
cellranger-count cellranger
updated 4 months ago by 115k • written 4 months ago by ▴ 10
0
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1
reply
1.1k
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Comment: Comment: Cellranger counts: how to set the value for "--expect-cells" if you can't guess
4 months ago by Aaron ▴ 10
0
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0
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205
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Difference between "--solostrand" and "--readstrand" commands in STARsolo
STARsolo
4 months ago by Aaron ▴ 10
3
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2
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612
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Improving my STARsolo results
STARsolo
updated 4 months ago by ▴ 20 • written 4 months ago by ▴ 10
1
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3
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502
views
Telling apart control and treatment groups in Seurat Visualizations
Visualizations Seurat Data
updated 4 months ago by 8.1k • written 4 months ago by ▴ 10
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