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Need to specify "--chemistry" argument in "cellranger count"
cellranger-count cellranger
updated 12 months ago by ★ 1.8k • written 2.4 years ago by ▴ 30
0
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1
reply
625
views
Best software to analyze Novogene bulk RNA-seq
RNA-seq bulk
updated 16 months ago by 82k • written 16 months ago by ▴ 30
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3
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5.9k
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Trouble setting "ident" argument in FindMarkers in Seurat
Seurat FindMarkers
updated 20 months ago by ▴ 190 • written 2.3 years ago by ▴ 30
0
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1
reply
480
views
How best to choose receptors to target when planning a lipid nanoparticle project
nanoparticles rna-seq
updated 20 months ago by 8.9k • written 20 months ago by ▴ 30
0
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1
reply
463
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RNA-seq data from human patients with both GBM and Alzheimer's
alzheimers rna-seq gbm
updated 20 months ago by ▴ 390 • written 20 months ago by ▴ 30
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0
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317
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Recurrent human GBM single-cell RNA-seq data
rna-seq gbm
21 months ago by Aaron ▴ 30
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0
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292
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single-cell Alzheimer's data from studies involving anti-herpetic drugs
alzheimers single-cell
22 months ago by Aaron ▴ 30
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0
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6.4k
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Comment: Comment: scRNAseq analysis - h5ad file conversion to Seurat format
22 months ago by Aaron ▴ 30
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0
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341
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Inferring tumor mutational burden from RNA-seq data
tumor burden mutational rna-seq
22 months ago by Aaron ▴ 30
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0
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643
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Comment: Comment: Cytokine/ Growth factor responsive gene list
23 months ago by Aaron ▴ 30
0
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1
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683
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Comment: Comment: Identifying individual amino acids or domains in Alphafold predictions
23 months ago by Aaron ▴ 30
2
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3
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683
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Identifying individual amino acids or domains in Alphafold predictions
Alphafold
updated 23 months ago by ★ 27k • written 23 months ago by ▴ 30
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0
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391
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scRNA-seq accurately captures expression of mitochondrial genes in neurons?
scRNA-seq
23 months ago by Aaron ▴ 30
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0
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2.4k
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Comment: Comment: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
2.3 years ago by Aaron ▴ 30
8
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3
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2.4k
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Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
Nebulosa Seurat plot_density
2.3 years ago by Aaron ▴ 30
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0
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665
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Trouble running FindConservedMarkers() after using CellSelector() in Seurat
FindConservedMarkers Seurat
2.3 years ago by Aaron ▴ 30
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0
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577
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Trouble running Seurat's FindConservedMarkers()
FindConservedMarkers Seurat
2.3 years ago by Aaron ▴ 30
8
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5
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3.8k
views
Annotating UMAP clusters in Seurat with SingleR
Seurat SingleR Scran UMAP annotating-clusters
updated 2.3 years ago by 82k • written 2.3 years ago by ▴ 30
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0
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3.8k
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Comment: Comment: Annotating UMAP clusters in Seurat with SingleR
2.3 years ago by Aaron ▴ 30
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0
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2.5k
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Comment: Comment: Cellranger counts: how to set the value for "--expect-cells" if you can't guess
2.3 years ago by Aaron ▴ 30
2
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4
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2.5k
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Cellranger counts: how to set the value for "--expect-cells" if you can't guess
cellranger-counts cellranger
2.3 years ago by Aaron ▴ 30
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0
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1.7k
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Comment: Comment: Trouble getting IntegrateData to include specified features in Seurat
2.3 years ago by Aaron ▴ 30
0
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1
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1.7k
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Comment: Comment: Trouble getting IntegrateData to include specified features in Seurat
2.3 years ago by Aaron ▴ 30
2
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4
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1.7k
views
Trouble getting IntegrateData to include specified features in Seurat
Seurat IntegrateData
2.3 years ago by Aaron ▴ 30
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0
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1.5k
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Comment: Comment: Forcing Seurat to include certain genes during integration
2.3 years ago by Aaron ▴ 30
8
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4
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1.5k
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Forcing Seurat to include certain genes during integration
Integration Seurat
2.3 years ago by Aaron ▴ 30
1
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1
reply
1.2k
views
Controlling for mouse and human cell-cycle aspects of data simultaneously in Seurat
PDX Seurat CellCycleScoring
updated 2.3 years ago by ★ 16k • written 2.3 years ago by ▴ 30
0
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0
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903
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Comment: Comment: Separating gene expression data from human tumor and model organism in RNA-seq a
2.4 years ago by Aaron ▴ 30
2
votes
2
replies
903
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Separating gene expression data from human tumor and model organism in RNA-seq analysis
PDX-models Seurat
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 30
0
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0
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2.2k
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Comment: Comment: List of cell cycle markers to use as reference in CellCycleScoring() in Seurat
2.4 years ago by Aaron ▴ 30
2
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3
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2.2k
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List of cell cycle markers to use as reference in CellCycleScoring() in Seurat
Seurat CellCycleScoring
2.4 years ago by Aaron ▴ 30
0
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1
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2.5k
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Comment: Comment: Cellranger counts: how to set the value for "--expect-cells" if you can't guess
2.4 years ago by Aaron ▴ 30
0
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0
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591
views
Difference between "--solostrand" and "--readstrand" commands in STARsolo
STARsolo
2.4 years ago by Aaron ▴ 30
5
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2
replies
2.1k
views
Improving my STARsolo results
STARsolo
updated 2.4 years ago by ▴ 40 • written 2.4 years ago by ▴ 30
1
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3
replies
1.7k
views
Telling apart control and treatment groups in Seurat Visualizations
Visualizations Seurat Data
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 30
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