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2
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4
replies
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How does Salmon handle multimapped reads?
rnaseq multimapping nf-core salmon
updated 7 months ago by 152k • written 7 months ago by • 0
1
vote
2
replies
586
views
Handling of genes with multiple entries in ENSEMBL
rna-seq ensembl
7 months ago by marionette.kent • 0
2
votes
7
replies
1.4k
views
Uneven raw read counts per sample for ATAC-Seq differential analysis
atac-seq
8 months ago by marionette.kent • 0
0
votes
0
replies
326
views
Matching of GSVA score of a single sample to its drug sensitivity
GSVA
9 months ago by marionette.kent • 0
7
votes
12
replies
2.7k
views
RNA-Seq mutation calling without germline data
rna-seq mutation
updated 8 months ago by 4.1k • written 9 months ago by • 0
2
votes
3
replies
1.3k
views
STAR alignment setting for RNA-Seq data from mouse background expressing a human ortholog
alignment star ortholog rna-seq
updated 16 months ago by 15k • written 16 months ago by • 0
2
votes
3
replies
941
views
Collapsing Transcript Count Matrix to Gene Count Matrix
rna-seq gene dge transcripts
updated 19 months ago by 45k • written 19 months ago by • 0
0
votes
0
replies
530
views
Incorporating information of control samples in sva, ComBat or models in DGE analysis (DESeq2/limma, etc)
sva DESeq2 limma Batch-Effect
updated 11 months ago by 45k • written 3.3 years ago by • 0
0
votes
0
replies
638
views
DESeq2 for comparison of enhancer activity (eRNA)
enhancer eRNA DESeq2
3.5 years ago by marionette.kent • 0
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