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Comment: C: cnvkit bgzf_read error 4 after 4 bytes
5.0 years ago by sutturka ▴ 190
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5.6k
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Comment: C: Y axis PlotHeatMap Deeptools
5.2 years ago by sutturka ▴ 190
2
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3.6k
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Answer: A: Noisy germline CNV data using CNVKit
5.6 years ago by sutturka ▴ 190
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25k
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Comment: C: Dotplot for filtered pathways result
6.3 years ago by sutturka ▴ 190
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5.0k
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Answer: A: Downstream analysis of VCF files obtained from VarScan2
6.5 years ago by sutturka ▴ 190
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5.6k
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Comment: C: featureCounts in predicting strand specificity
6.9 years ago by sutturka ▴ 190
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5.6k
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Comment: C: Peak calling with MACS for paired end DNase-seq data
6.9 years ago by sutturka ▴ 190
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4.7k
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Comment: C: Running vcf2maf on snpeff-annotated vcfs
7.1 years ago by sutturka ▴ 190
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7.3k
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Answer: A: Issue converting VCF to MAF using snpEff annotations
7.2 years ago by sutturka ▴ 190
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1
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4.7k
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Answer: A: Running vcf2maf on snpeff-annotated vcfs
7.2 years ago by sutturka ▴ 190
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2.6k
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Comment: C: Convert (Copy Number Variation) CNV to gene
7.2 years ago by sutturka ▴ 190
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6.2k
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Comment: C: How to annotate CNV events with gene information?
7.2 years ago by sutturka ▴ 190
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2.7k
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Comment: C: How to determine high-quality somatic mutations
7.2 years ago by sutturka ▴ 190
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3.7k
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Comment: C: mouse mm10 supporting file for GISTIC 2.0
7.2 years ago by sutturka ▴ 190
0
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1
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11k
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Comment: C: gistic for whole genome sequencing copy number analysis
7.2 years ago by sutturka ▴ 190
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1
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14k
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Comment: C: How to use MutSigCV correctly
7.2 years ago by sutturka ▴ 190
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5.4k
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Comment: C: MutSigCV input files
7.2 years ago by sutturka ▴ 190
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12k
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Answer: A: Download SAM/BAM files from SRA takes ages!!!
7.6 years ago by sutturka ▴ 190
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20k
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Answer: A: Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
7.6 years ago by sutturka ▴ 190
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4.0k
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Answer: A: Experiences with large datasets
7.6 years ago by sutturka ▴ 190
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1
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4.7k
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Answer: A: How to use GNU parallel to download SRA files
7.6 years ago by sutturka ▴ 190
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4.6k
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Answer: A: Clusterprofiler for KEGG enrichment (non-model species)
7.9 years ago by sutturka ▴ 190
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1
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5.7k
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Comment: C: Concept of Matched normal vs. Virtual Normal
8.0 years ago by sutturka ▴ 190
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3
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5.7k
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Concept of Matched normal vs. Virtual Normal
Somatic mutations Virtual normal matched normal
updated 8.0 years ago by 22k • written 8.0 years ago by ▴ 190
3
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1
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3.6k
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Answer: A: Use PacBio FASTQ reads to polish\correct a PacBio Fasta assembly without Quiver
8.3 years ago by sutturka ▴ 190
2
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1
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4.8k
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Answer: A: SSPACE assembling Genome!
8.3 years ago by sutturka ▴ 190
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9.9k
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Comment: C: How basemean/basemeanA/basemeanB and log2foldchange are counted in DESeq2 ?
8.7 years ago by sutturka ▴ 190
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46k
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Answer: A: Extract Cds Fastas From A Gff Annotation + Reference Sequence
9.0 years ago by sutturka ▴ 190
1
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0
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9.0k
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Answer: A: Masurca Error With Illumina Assembly
11.5 years ago by sutturka ▴ 190
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