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Comment: C: cnvkit bgzf_read error 4 after 4 bytes
2.8 years ago by sutturka ▴ 180
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3.6k
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Comment: C: Y axis PlotHeatMap Deeptools
3.0 years ago by sutturka ▴ 180
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1
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1.9k
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Answer: A: Noisy germline CNV data using CNVKit
3.3 years ago by sutturka ▴ 180
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1
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18k
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Comment: C: Dotplot for filtered pathways result
4.0 years ago by sutturka ▴ 180
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3.4k
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Answer: A: Downstream analysis of VCF files obtained from VarScan2
4.2 years ago by sutturka ▴ 180
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3.8k
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Comment: C: featureCounts in predicting strand specificity
4.6 years ago by sutturka ▴ 180
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3.5k
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Comment: C: Peak calling with MACS for paired end DNase-seq data
4.6 years ago by sutturka ▴ 180
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2.5k
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Comment: C: Running vcf2maf on snpeff-annotated vcfs
4.8 years ago by sutturka ▴ 180
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5.6k
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Answer: A: Issue converting VCF to MAF using snpEff annotations
4.9 years ago by sutturka ▴ 180
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2.5k
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Answer: A: Running vcf2maf on snpeff-annotated vcfs
4.9 years ago by sutturka ▴ 180
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1.8k
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Comment: C: Convert (Copy Number Variation) CNV to gene
4.9 years ago by sutturka ▴ 180
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4.7k
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Comment: C: How to annotate CNV events with gene information?
4.9 years ago by sutturka ▴ 180
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1.5k
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Comment: C: How to determine high-quality somatic mutations
4.9 years ago by sutturka ▴ 180
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2.9k
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Comment: C: mouse mm10 supporting file for GISTIC 2.0
4.9 years ago by sutturka ▴ 180
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1
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9.0k
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Comment: C: gistic for whole genome sequencing copy number analysis
4.9 years ago by sutturka ▴ 180
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1
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10k
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Comment: C: How to use MutSigCV correctly
5.0 years ago by sutturka ▴ 180
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4.5k
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Comment: C: MutSigCV input files
5.0 years ago by sutturka ▴ 180
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7.8k
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Answer: A: Download SAM/BAM files from SRA takes ages!!!
5.3 years ago by sutturka ▴ 180
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16k
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Answer: A: Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
5.3 years ago by sutturka ▴ 180
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2.1k
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Answer: A: Experiences with large datasets
5.3 years ago by sutturka ▴ 180
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1
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3.2k
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Answer: A: How to use GNU parallel to download SRA files
5.3 years ago by sutturka ▴ 180
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3.7k
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Answer: A: Clusterprofiler for KEGG enrichment (non-model species)
5.7 years ago by sutturka ▴ 180
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1
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3.8k
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Comment: C: Concept of Matched normal vs. Virtual Normal
5.7 years ago by sutturka ▴ 180
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3
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3.8k
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Concept of Matched normal vs. Virtual Normal
Somatic mutations Virtual normal matched normal
updated 5.7 years ago by 22k • written 5.7 years ago by ▴ 180
3
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1
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2.8k
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Answer: A: Use PacBio FASTQ reads to polish\correct a PacBio Fasta assembly without Quiver
6.0 years ago by sutturka ▴ 180
2
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1
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3.9k
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Answer: A: SSPACE assembling Genome!
6.0 years ago by sutturka ▴ 180
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8.0k
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Comment: C: How basemean/basemeanA/basemeanB and log2foldchange are counted in DESeq2 ?
6.4 years ago by sutturka ▴ 180
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41k
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Answer: A: Extract Cds Fastas From A Gff Annotation + Reference Sequence
6.7 years ago by sutturka ▴ 180
1
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0
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7.5k
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Answer: A: Masurca Error With Illumina Assembly
9.2 years ago by sutturka ▴ 180
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