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Comment: C: cnvkit bgzf_read error 4 after 4 bytes
3.6 years ago by sutturka ▴ 190
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4.3k
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Comment: C: Y axis PlotHeatMap Deeptools
3.8 years ago by sutturka ▴ 190
2
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1
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2.5k
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Answer: A: Noisy germline CNV data using CNVKit
4.2 years ago by sutturka ▴ 190
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1
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21k
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Comment: C: Dotplot for filtered pathways result
4.9 years ago by sutturka ▴ 190
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4.1k
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Answer: A: Downstream analysis of VCF files obtained from VarScan2
5.0 years ago by sutturka ▴ 190
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1
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4.4k
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Comment: C: featureCounts in predicting strand specificity
5.5 years ago by sutturka ▴ 190
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4.2k
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Comment: C: Peak calling with MACS for paired end DNase-seq data
5.5 years ago by sutturka ▴ 190
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2.9k
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Comment: C: Running vcf2maf on snpeff-annotated vcfs
5.6 years ago by sutturka ▴ 190
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6.2k
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Answer: A: Issue converting VCF to MAF using snpEff annotations
5.7 years ago by sutturka ▴ 190
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1
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2.9k
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Answer: A: Running vcf2maf on snpeff-annotated vcfs
5.7 years ago by sutturka ▴ 190
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2.1k
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Comment: C: Convert (Copy Number Variation) CNV to gene
5.7 years ago by sutturka ▴ 190
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5.2k
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Comment: C: How to annotate CNV events with gene information?
5.7 years ago by sutturka ▴ 190
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1.8k
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Comment: C: How to determine high-quality somatic mutations
5.8 years ago by sutturka ▴ 190
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0
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3.2k
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Comment: C: mouse mm10 supporting file for GISTIC 2.0
5.8 years ago by sutturka ▴ 190
0
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1
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9.8k
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Comment: C: gistic for whole genome sequencing copy number analysis
5.8 years ago by sutturka ▴ 190
0
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1
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11k
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Comment: C: How to use MutSigCV correctly
5.8 years ago by sutturka ▴ 190
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4.8k
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Comment: C: MutSigCV input files
5.8 years ago by sutturka ▴ 190
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9.1k
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Answer: A: Download SAM/BAM files from SRA takes ages!!!
6.2 years ago by sutturka ▴ 190
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18k
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Answer: A: Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
6.2 years ago by sutturka ▴ 190
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2.7k
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Answer: A: Experiences with large datasets
6.2 years ago by sutturka ▴ 190
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1
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3.7k
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Answer: A: How to use GNU parallel to download SRA files
6.2 years ago by sutturka ▴ 190
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4.0k
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Answer: A: Clusterprofiler for KEGG enrichment (non-model species)
6.5 years ago by sutturka ▴ 190
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1
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4.5k
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Comment: C: Concept of Matched normal vs. Virtual Normal
6.6 years ago by sutturka ▴ 190
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3
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4.5k
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Concept of Matched normal vs. Virtual Normal
Somatic mutations Virtual normal matched normal
updated 6.6 years ago by 22k • written 6.6 years ago by ▴ 190
3
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1
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3.0k
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Answer: A: Use PacBio FASTQ reads to polish\correct a PacBio Fasta assembly without Quiver
6.8 years ago by sutturka ▴ 190
2
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1
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4.2k
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Answer: A: SSPACE assembling Genome!
6.8 years ago by sutturka ▴ 190
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8.6k
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Comment: C: How basemean/basemeanA/basemeanB and log2foldchange are counted in DESeq2 ?
7.3 years ago by sutturka ▴ 190
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42k
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Answer: A: Extract Cds Fastas From A Gff Annotation + Reference Sequence
7.5 years ago by sutturka ▴ 190
1
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0
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7.9k
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Answer: A: Masurca Error With Illumina Assembly
10.1 years ago by sutturka ▴ 190
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