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Showing :
questions
2
votes
5
replies
310
views
How to trim transcripts using information from NCBI contamination screen report
RNAseq
assembly
transcriptome
contamination
3 days ago by
Lada
▴ 30
0
votes
0
replies
356
views
Pearson correlation for RNAseq data - input formats
vst
Pearson-correlation
TPM
rlog
RNA-seq
updated 5 months ago by
Ram
43k • written 5 months ago by
Lada
▴ 30
0
votes
0
replies
298
views
Salmon - mapping outputs
transcriptome
RNAseq
Salmon
6 months ago by
Lada
▴ 30
0
votes
0
replies
346
views
OrthoPhy
orthophy
orthofinder
updated 7 months ago by
Ram
43k • written 7 months ago by
Lada
▴ 30
1
vote
2
replies
577
views
ML tree inferred from multiple genes
phylogeny
iqtree
ML
phylotranscriptomics
orthologues
7 months ago by
Lada
▴ 30
3
votes
5
replies
852
views
Multiple sequence aligments - parallelisation
MSA
phylotranscriptomics
muscle
clustal
8 months ago by
Lada
▴ 30
3
votes
5
replies
744
views
Expected number of raw reads in fq.gz files in PE sequencing
RNA-seq
fastq
transcriptomics
updated 8 months ago by
Ram
43k • written 8 months ago by
Lada
▴ 30
1
vote
2
replies
472
views
Corset -D parameter
RNAseq
transcriptomic
Corset
13 months ago by
Lada
▴ 30
2
votes
2
replies
897
views
Salmon lib_format_counts.json - explanation
RNAseq
strand-specificity
transcriptomic
Salmon
14 months ago by
Lada
▴ 30
0
votes
1
reply
430
views
What is correct percentage of sense-stranded transcripts in directional de novo assemblies ?
Trinity
strand-specificity
RNA-seq
Transdecoder
updated 14 months ago by
Ram
43k • written 14 months ago by
Lada
▴ 30
2
votes
4
replies
2.1k
views
GSEA on nonmodel organisms
GSEA
RNAseq
transcriptomics
multispecies
R
15 months ago by
Lada
▴ 30
3
votes
4
replies
645
views
Transcriptome assembly -mixing stranded and non-stranded data
Transcriptome
assembly
2.1 years ago by
Lada
▴ 30
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