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331
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Bandage visualization of the transcriptome
Trinity transcriptomics Bandage RNA-seq
updated 7 months ago by 45k • written 7 months ago by ▴ 40
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1
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889
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Comment: Comment: TaxID mapping file
11 months ago by Lada ▴ 40
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0
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889
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Comment: Comment: TaxID mapping file
11 months ago by Lada ▴ 40
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4
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889
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TaxID mapping file
annotation blobtools RNAseq decontamination transcriptomes
updated 12 days ago by • 0 • written 12 months ago by ▴ 40
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1.1k
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
12 months ago by Lada ▴ 40
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1
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1.1k
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
12 months ago by Lada ▴ 40
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0
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1.1k
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
12 months ago by Lada ▴ 40
2
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5
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1.1k
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How to trim transcripts using information from NCBI contamination screen report
RNAseq assembly transcriptome contamination
12 months ago by Lada ▴ 40
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0
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26k
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Comment: Comment: BLAST options: max_target_seqs and num_alignments
13 months ago by Lada ▴ 40
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0
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590
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Pearson correlation for RNAseq data - input formats
vst Pearson-correlation TPM rlog RNA-seq
updated 18 months ago by 45k • written 18 months ago by ▴ 40
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0
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451
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Salmon - mapping outputs
transcriptome RNAseq Salmon
18 months ago by Lada ▴ 40
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2.2k
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Comment: Comment: Providing multiple read files to Salmon
18 months ago by Lada ▴ 40
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1
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2.2k
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Comment: Comment: Providing multiple read files to Salmon
18 months ago by Lada ▴ 40
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1
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3.4k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
19 months ago by Lada ▴ 40
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2
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3.4k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
20 months ago by Lada ▴ 40
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0
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532
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OrthoPhy
orthophy orthofinder
updated 20 months ago by 45k • written 20 months ago by ▴ 40
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2
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3.4k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
updated 19 months ago by 151k • written 20 months ago by ▴ 40
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0
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953
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Comment: Comment: ML tree inferred from multiple genes
20 months ago by Lada ▴ 40
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2
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953
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ML tree inferred from multiple genes
phylogeny iqtree ML phylotranscriptomics orthologues
20 months ago by Lada ▴ 40
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0
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1.2k
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Answer: Answer: How to download Time Calibration Data for Phylogenetic tree estimation ?
20 months ago by Lada ▴ 40
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0
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1.1k
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Answer: Answer: Fossil calibration in PAML software?
20 months ago by Lada ▴ 40
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0
replies
1.5k
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Comment: Comment: Multiple sequence aligments - parallelisation
20 months ago by Lada ▴ 40
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1
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1.5k
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Comment: Comment: Multiple sequence aligments - parallelisation
20 months ago by Lada ▴ 40
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1
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1.5k
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Comment: Comment: Multiple sequence aligments - parallelisation
20 months ago by Lada ▴ 40
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5
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1.5k
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Multiple sequence aligments - parallelisation
MSA phylotranscriptomics muscle clustal
20 months ago by Lada ▴ 40
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0
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1.5k
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
20 months ago by Lada ▴ 40
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0
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1.5k
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
20 months ago by Lada ▴ 40
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5
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1.5k
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Expected number of raw reads in fq.gz files in PE sequencing
RNA-seq fastq transcriptomics
updated 20 months ago by 45k • written 20 months ago by ▴ 40
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0
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1.2k
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Comment: Comment: EggNOG mapper annotation results
20 months ago by Lada ▴ 40
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1
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1.5k
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Comment: Comment: Comparative transcriptomics
23 months ago by Lada ▴ 40
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0
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715
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Comment: Comment: Corset -D parameter
2.1 years ago by Lada ▴ 40
1
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2
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715
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Corset -D parameter
RNAseq transcriptomic Corset
2.1 years ago by Lada ▴ 40
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0
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1.3k
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Comment: Comment: Salmon lib_format_counts.json - explanation
2.2 years ago by Lada ▴ 40
2
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2
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1.3k
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Salmon lib_format_counts.json - explanation
RNAseq strand-specificity transcriptomic Salmon
2.2 years ago by Lada ▴ 40
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0
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717
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Comment: Comment: What is correct percentage of sense-stranded transcripts in directional de novo
2.2 years ago by Lada ▴ 40
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1
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717
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What is correct percentage of sense-stranded transcripts in directional de novo assemblies ?
Trinity strand-specificity RNA-seq Transdecoder
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 40
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1
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31k
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Comment: Comment: Gene Set Enrichment Analysis after DESeq2
updated 12 weeks ago by 45k • written 2.2 years ago by ▴ 40
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0
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3.7k
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Comment: Comment: GSEA on nonmodel organisms
2.2 years ago by Lada ▴ 40
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0
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3.7k
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Comment: Comment: GSEA on nonmodel organisms
2.2 years ago by Lada ▴ 40
3
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4
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3.7k
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GSEA on nonmodel organisms
GSEA RNAseq transcriptomics multispecies R
2.2 years ago by Lada ▴ 40
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0
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1.6k
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Comment: Comment: Differentially gene expression multispecies
2.3 years ago by Lada ▴ 40
1
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0
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789
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Comment: Comment: How to normalise counts to compare RNAseq results between two spcecies
2.3 years ago by Lada ▴ 40
0
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1
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1.5k
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Comment: Comment: Comparative transcriptomics
2.3 years ago by Lada ▴ 40
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0
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1.4k
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Comment: Comment: comparative transcriptome - how to normalize and analyze DEGs?
2.3 years ago by Lada ▴ 40
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1
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2.2k
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Comment: Comment: Differential expression analysis
2.3 years ago by Lada ▴ 40
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0
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1.3k
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Comment: Comment: When comparing gene expression in different species, should I assemble separate
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 40
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0
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1.0k
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Answer: Answer: Differential Expression Analyses between closely related species
2.3 years ago by Lada ▴ 40
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0
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972
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
3.1 years ago by Lada ▴ 40
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1
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972
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
3.1 years ago by Lada ▴ 40
3
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4
replies
972
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Transcriptome assembly -mixing stranded and non-stranded data
Transcriptome assembly
3.1 years ago by Lada ▴ 40
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