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23k
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Comment:
Comment: BLAST options: max_target_seqs and num_alignments
7 days ago by
Lada
▴ 30
0
votes
0
replies
328
views
Pearson correlation for RNAseq data - input formats
vst
Pearson-correlation
TPM
rlog
RNA-seq
updated 4 months ago by
Ram
43k • written 4 months ago by
Lada
▴ 30
0
votes
0
replies
276
views
Salmon - mapping outputs
transcriptome
RNAseq
Salmon
5 months ago by
Lada
▴ 30
0
votes
0
replies
1.2k
views
Comment:
Comment: Providing multiple read files to Salmon
5 months ago by
Lada
▴ 30
0
votes
1
reply
1.2k
views
Comment:
Comment: Providing multiple read files to Salmon
5 months ago by
Lada
▴ 30
0
votes
1
reply
2.3k
views
Comment:
Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
6 months ago by
Lada
▴ 30
0
votes
2
replies
2.3k
views
Comment:
Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
6 months ago by
Lada
▴ 30
0
votes
0
replies
324
views
OrthoPhy
orthophy
orthofinder
updated 6 months ago by
Ram
43k • written 6 months ago by
Lada
▴ 30
0
votes
2
replies
2.3k
views
Comment:
Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
updated 6 months ago by
GenoMax
140k • written 6 months ago by
Lada
▴ 30
0
votes
0
replies
538
views
Comment:
Comment: ML tree inferred from multiple genes
6 months ago by
Lada
▴ 30
1
vote
2
replies
538
views
ML tree inferred from multiple genes
phylogeny
iqtree
ML
phylotranscriptomics
orthologues
6 months ago by
Lada
▴ 30
1
vote
0
replies
796
views
Answer:
Answer: How to download Time Calibration Data for Phylogenetic tree estimation ?
6 months ago by
Lada
▴ 30
0
votes
0
replies
898
views
Answer:
Answer: Fossil calibration in PAML software?
6 months ago by
Lada
▴ 30
0
votes
0
replies
789
views
Comment:
Comment: Multiple sequence aligments - parallelisation
7 months ago by
Lada
▴ 30
0
votes
1
reply
789
views
Comment:
Comment: Multiple sequence aligments - parallelisation
7 months ago by
Lada
▴ 30
0
votes
1
reply
789
views
Comment:
Comment: Multiple sequence aligments - parallelisation
7 months ago by
Lada
▴ 30
3
votes
5
replies
789
views
Multiple sequence aligments - parallelisation
MSA
phylotranscriptomics
muscle
clustal
7 months ago by
Lada
▴ 30
0
votes
0
replies
689
views
Comment:
Comment: Expected number of raw reads in fq.gz files in PE sequencing
7 months ago by
Lada
▴ 30
0
votes
0
replies
689
views
Comment:
Comment: Expected number of raw reads in fq.gz files in PE sequencing
7 months ago by
Lada
▴ 30
3
votes
5
replies
689
views
Expected number of raw reads in fq.gz files in PE sequencing
RNA-seq
fastq
transcriptomics
updated 7 months ago by
Ram
43k • written 7 months ago by
Lada
▴ 30
0
votes
0
replies
735
views
Comment:
Comment: EggNOG mapper annotation results
7 months ago by
Lada
▴ 30
0
votes
1
reply
955
views
Comment:
Comment: Comparative transcriptomics
10 months ago by
Lada
▴ 30
0
votes
0
replies
445
views
Comment:
Comment: Corset -D parameter
11 months ago by
Lada
▴ 30
1
vote
2
replies
445
views
Corset -D parameter
RNAseq
transcriptomic
Corset
11 months ago by
Lada
▴ 30
0
votes
0
replies
856
views
Comment:
Comment: Salmon lib_format_counts.json - explanation
13 months ago by
Lada
▴ 30
2
votes
2
replies
856
views
Salmon lib_format_counts.json - explanation
RNAseq
strand-specificity
transcriptomic
Salmon
13 months ago by
Lada
▴ 30
0
votes
0
replies
397
views
Comment:
Comment: What is correct percentage of sense-stranded transcripts in directional de novo
13 months ago by
Lada
▴ 30
0
votes
1
reply
397
views
What is correct percentage of sense-stranded transcripts in directional de novo assemblies ?
Trinity
strand-specificity
RNA-seq
Transdecoder
updated 13 months ago by
Ram
43k • written 13 months ago by
Lada
▴ 30
0
votes
1
reply
25k
views
Comment:
Comment: Gene Set Enrichment Analysis after DESeq2
13 months ago by
Lada
▴ 30
0
votes
0
replies
2.0k
views
Comment:
Comment: GSEA on nonmodel organisms
14 months ago by
Lada
▴ 30
0
votes
0
replies
2.0k
views
Comment:
Comment: GSEA on nonmodel organisms
14 months ago by
Lada
▴ 30
2
votes
4
replies
2.0k
views
GSEA on nonmodel organisms
GSEA
RNAseq
transcriptomics
multispecies
R
14 months ago by
Lada
▴ 30
0
votes
0
replies
1.2k
views
Comment:
Comment: Differentially gene expression multispecies
14 months ago by
Lada
▴ 30
1
vote
0
replies
498
views
Comment:
Comment: How to normalise counts to compare RNAseq results between two spcecies
14 months ago by
Lada
▴ 30
0
votes
1
reply
955
views
Comment:
Comment: Comparative transcriptomics
14 months ago by
Lada
▴ 30
0
votes
0
replies
951
views
Comment:
Comment: comparative transcriptome - how to normalize and analyze DEGs?
14 months ago by
Lada
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: Differential expression analysis
14 months ago by
Lada
▴ 30
0
votes
0
replies
868
views
Comment:
Comment: When comparing gene expression in different species, should I assemble separate
updated 14 months ago by
Ram
43k • written 14 months ago by
Lada
▴ 30
0
votes
0
replies
642
views
Answer:
Answer: Differential Expression Analyses between closely related species
14 months ago by
Lada
▴ 30
0
votes
0
replies
606
views
Comment:
Comment: Transcriptome assembly -mixing stranded and non-stranded data
2.0 years ago by
Lada
▴ 30
0
votes
1
reply
606
views
Comment:
Comment: Transcriptome assembly -mixing stranded and non-stranded data
2.0 years ago by
Lada
▴ 30
3
votes
4
replies
606
views
Transcriptome assembly -mixing stranded and non-stranded data
Transcriptome
assembly
2.0 years ago by
Lada
▴ 30
0
votes
0
replies
2.7k
views
Answer:
Answer: strand-specific transcriptome Oases vs. CLC
2.0 years ago by
Lada
▴ 30
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