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Comment: Comment: deeptools computeMatrix gtf file : if name not in self.exons[self.labelIdx]: I
22 months ago by Trivas ★ 1.9k
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Comment: Comment: deeptools computeMatrix gtf file : if name not in self.exons[self.labelIdx]: I
22 months ago by Trivas ★ 1.9k
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Answer: Answer: downstream analysis on the output of nf-core/rnaseq pipeline
22 months ago by Trivas ★ 1.9k
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Comment: Comment: Overlapping and merging ChIP-seq peaks
22 months ago by Trivas ★ 1.9k
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Comment: Comment: Psuedobulk analysis of single cell RNA-Seq data
22 months ago by Trivas ★ 1.9k
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Comment: Comment: Overlapping and merging ChIP-seq peaks
22 months ago by Trivas ★ 1.9k
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Answer: Answer: how to remove multiple columns from a file in R
23 months ago by Trivas ★ 1.9k
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Comment: Comment: Resolving over clustered NGS with Q-scores
23 months ago by Trivas ★ 1.9k
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Answer: Answer: Resolving over clustered NGS with Q-scores
23 months ago by Trivas ★ 1.9k
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Answer: Answer: How Can I move the scattered dots more closer into the center of box ?
23 months ago by Trivas ★ 1.9k
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Answer: Answer: Running STAR on fastq file generated from a RNA-seq experiment
23 months ago by Trivas ★ 1.9k
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Answer: Answer: miRNA annotation miRge3.0
23 months ago by Trivas ★ 1.9k
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Comment: Comment: STAR output
23 months ago by Trivas ★ 1.9k
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Comment: Comment: Does DESeq2 correct for library size when importing the counts with DESeqDataSet
23 months ago by Trivas ★ 1.9k
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Answer: Answer: how to fix low RNA input in bulk RNAseq data analysis?
23 months ago by Trivas ★ 1.9k
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Comment: Comment: annotatePeak error for some problem
23 months ago by Trivas ★ 1.9k
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Answer: Answer: It is valiable identify hubgenes of miRNAs target genes
24 months ago by Trivas ★ 1.9k
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Comment: Comment: BrdU analysis of yeast replication
2.0 years ago by Trivas ★ 1.9k
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Answer: Answer: should I use normalized counts or transformed of normalized counts for RNA-seq a
2.0 years ago by Trivas ★ 1.9k
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Comment: Comment: Providing multiple read files to Salmon
2.0 years ago by Trivas ★ 1.9k
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Comment: Comment: Low Fraction Gene Expression Reads in Spots in Visium 10x Fresh Frozen experimen
2.0 years ago by Trivas ★ 1.9k
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Comment: Comment: Fast QC results (per sequence GC content) - RNA seq
2.0 years ago by Trivas ★ 1.9k
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Comment: Comment: Interpreting the CpG pearson correlation plot
2.0 years ago by Trivas ★ 1.9k
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Comment: Comment: STAR Genome index Error
2.1 years ago by Trivas ★ 1.9k
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Comment: Comment: STAR Genome index Error
2.1 years ago by Trivas ★ 1.9k
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Answer: Answer: tximport error: vroom
2.1 years ago by Trivas ★ 1.9k
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Answer: Answer: DEG gene list and find common TF from public ChlP-Seq data
2.1 years ago by Trivas ★ 1.9k
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Answer: Answer: GOSt Plot
2.1 years ago by Trivas ★ 1.9k
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Answer: Answer: How to import bigwig files into igvR
2.1 years ago by Trivas ★ 1.9k
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Comment: Comment: Subclustering of intergated cells from scRNA-seq data
2.1 years ago by Trivas ★ 1.9k
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Answer: Answer: Is it possible to convert 3 prime sequencing read counts into TPMs?
2.1 years ago by Trivas ★ 1.9k
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Comment: Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
2.1 years ago by Trivas ★ 1.9k
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Comment: Comment: GO annotation in R using library(org.Hs.eg.db)
2.1 years ago by Trivas ★ 1.9k
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Answer: Answer: Normalisation on subset of genes
2.2 years ago by Trivas ★ 1.9k
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Comment: Comment: bedops alternative for bedtools -unionbedg ?
2.2 years ago by Trivas ★ 1.9k
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Comment: Comment: Heatmap ChIP-seq average signal
2.2 years ago by Trivas ★ 1.9k
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Comment: Comment: Identifying transcription factors for a list of genes
2.2 years ago by Trivas ★ 1.9k
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Comment: Comment: Get the "average" of a column in a heatmap, combine 3 heatmaps into 1?
2.2 years ago by Trivas ★ 1.9k
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1.4k
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Answer: Answer: What to do after importing quantification with tximport
2.2 years ago by Trivas ★ 1.9k
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Comment: Comment: How to add value of column to barchart on hover?
2.2 years ago by Trivas ★ 1.9k
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Comment: Comment: How to add value of column to barchart on hover?
2.2 years ago by Trivas ★ 1.9k
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Comment: Comment: Zero Mapping rate
2.2 years ago by Trivas ★ 1.9k
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Comment: Comment: Trimming of reads in miRNA-Seq data
2.2 years ago by Trivas ★ 1.9k
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3.6k
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Comment: Comment: Trimming of reads in miRNA-Seq data
2.2 years ago by Trivas ★ 1.9k
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6.5k
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Comment: Comment: Heatmap legend position change
2.2 years ago by Trivas ★ 1.9k
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5.1k
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Comment: Comment: What to do about "outlier" values in volcano plot?
2.2 years ago by Trivas ★ 1.9k
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2
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1.4k
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Answer: Answer: how to run ROSE to find super enhnacers-
2.2 years ago by Trivas ★ 1.9k
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963
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Answer: Answer: W,M,R nucleotides
2.3 years ago by Trivas ★ 1.9k
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Comment: Comment: How to Detect Presence of HPV-33 in Sample Data (FASTQ, BAM, VCF on GRCh37)
2.3 years ago by Trivas ★ 1.9k
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910
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Answer: Answer: Bowtie - multiple alignments and seed length vs read length in miRNA mapping
2.3 years ago by Trivas ★ 1.9k
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