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Answer: Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file
4 days ago by Trivas ★ 1.8k
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328
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Answer: Answer: Database for non cancer cell lines
7 weeks ago by Trivas ★ 1.8k
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0
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438
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Answer: Answer: Single cell demultiplexing using 10x and TotalSeq-B
9 weeks ago by Trivas ★ 1.8k
2
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607
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
9 weeks ago by Trivas ★ 1.8k
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2
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1.1k
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Answer: Answer: Import list and assign distinct colors in R
9 weeks ago by Trivas ★ 1.8k
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414
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Answer: Answer: How to extract unmapped reads to assemble a plasmid
10 weeks ago by Trivas ★ 1.8k
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388
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Answer: Answer: installation of deepTools
12 weeks ago by Trivas ★ 1.8k
2
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352
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Answer: Answer: Read coverage bias
12 weeks ago by Trivas ★ 1.8k
2
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346
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Answer: Answer: sweepfinder2
3 months ago by Trivas ★ 1.8k
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483
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Answer: Answer: How to make the Input track flat for ChIP-seq
4 months ago by Trivas ★ 1.8k
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317
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Answer: Answer: Help requiring DEXSeq in R
4 months ago by Trivas ★ 1.8k
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423
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Answer: Answer: downstream analysis on the output of nf-core/rnaseq pipeline
5 months ago by Trivas ★ 1.8k
2
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1
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531
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Answer: Answer: how to remove multiple columns from a file in R
5 months ago by Trivas ★ 1.8k
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709
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Answer: Answer: Resolving over clustered NGS with Q-scores
5 months ago by Trivas ★ 1.8k
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610
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Answer: Answer: How Can I move the scattered dots more closer into the center of box ?
5 months ago by Trivas ★ 1.8k
3
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439
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Answer: Answer: Running STAR on fastq file generated from a RNA-seq experiment
5 months ago by Trivas ★ 1.8k
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288
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Answer: Answer: miRNA annotation miRge3.0
5 months ago by Trivas ★ 1.8k
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482
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Answer: Answer: how to fix low RNA input in bulk RNAseq data analysis?
6 months ago by Trivas ★ 1.8k
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355
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Answer: Answer: It is valiable identify hubgenes of miRNAs target genes
6 months ago by Trivas ★ 1.8k
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540
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Answer: Answer: should I use normalized counts or transformed of normalized counts for RNA-seq a
6 months ago by Trivas ★ 1.8k
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706
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Answer: Answer: tximport error: vroom
7 months ago by Trivas ★ 1.8k
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603
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Answer: Answer: DEG gene list and find common TF from public ChlP-Seq data
7 months ago by Trivas ★ 1.8k
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606
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Answer: Answer: GOSt Plot
7 months ago by Trivas ★ 1.8k
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544
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Answer: Answer: How to import bigwig files into igvR
7 months ago by Trivas ★ 1.8k
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465
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Answer: Answer: Is it possible to convert 3 prime sequencing read counts into TPMs?
7 months ago by Trivas ★ 1.8k
2
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550
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Answer: Answer: Normalisation on subset of genes
8 months ago by Trivas ★ 1.8k
2
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1
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580
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Answer: Answer: What to do after importing quantification with tximport
8 months ago by Trivas ★ 1.8k
2
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2
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688
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Answer: Answer: how to run ROSE to find super enhnacers-
9 months ago by Trivas ★ 1.8k
1
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469
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Answer: Answer: W,M,R nucleotides
9 months ago by Trivas ★ 1.8k
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0
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455
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Answer: Answer: Bowtie - multiple alignments and seed length vs read length in miRNA mapping
10 months ago by Trivas ★ 1.8k
2
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0
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488
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Answer: Answer: Calculate TMB from BAM file
10 months ago by Trivas ★ 1.8k
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385
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Answer: Answer: How to add new coordinates to the existing .gtf annotation file
10 months ago by Trivas ★ 1.8k
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636
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Answer: Answer: Lollipop plots for structural variation coordinates
10 months ago by Trivas ★ 1.8k
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639
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Answer: Answer: Is it possible to do standard GSEA in R?
10 months ago by Trivas ★ 1.8k
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2
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1.3k
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Answer: Answer: differential splicing between two groups for 5 genes
11 months ago by Trivas ★ 1.8k
3
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732
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Answer: Answer: Veen diagram in RNA-Seq
11 months ago by Trivas ★ 1.8k
0
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2
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1.3k
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Answer: Answer: Providing multiple read files to Salmon
11 months ago by Trivas ★ 1.8k
3
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0
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932
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Answer: Answer: extreme high log2FoldChange in DESeq2 result
11 months ago by Trivas ★ 1.8k
0
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1
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1.3k
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Answer: Answer: A question about the raw RNA-seq processing workflow
11 months ago by Trivas ★ 1.8k
2
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1
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596
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Answer: Answer: I don't really understand what fold mean means
11 months ago by Trivas ★ 1.8k
1
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1
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1.1k
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Answer: Answer: How to get information about promoter from bulk-RNAseq?
11 months ago by Trivas ★ 1.8k
1
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1
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644
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Answer: Answer: How to make the profile line of `deepTools::plotHeatmap` more smooth?
11 months ago by Trivas ★ 1.8k
0
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1
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1.3k
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Answer: Answer: Dot Plot using KEGG
11 months ago by Trivas ★ 1.8k
0
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1
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957
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Answer: Answer: How to make a dotplot for bulk RNA average expression ?
11 months ago by Trivas ★ 1.8k
1
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0
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522
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Answer: Answer: Covert multiple short sequence into list of IUPAC motif
11 months ago by Trivas ★ 1.8k
0
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1
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799
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Answer: Answer: Using t test to compare z-scores from RNA expression data
12 months ago by Trivas ★ 1.8k
1
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0
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1.4k
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Answer: Answer: How to convert chromosome locations to gene symbols?
12 months ago by Trivas ★ 1.8k
5
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1
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729
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Answer: Answer: Why is RNA-Seq library size not constant among samples?
12 months ago by Trivas ★ 1.8k
2
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0
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713
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Answer: Answer: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
12 months ago by Trivas ★ 1.8k
0
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0
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1.7k
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Answer: Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
12 months ago by Trivas ★ 1.8k
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