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3
votes
2
replies
22k
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Answer: A: Extract sequence with header from a fasta file with specific ID given in another
updated 5.8 years ago by 45k • written 10.7 years ago by ★ 1.8k
1
vote
0
replies
21k
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Answer: A: Choosing Random Set Of Seqs From Larger Set
updated 5.8 years ago by 45k • written 11.6 years ago by ★ 1.8k
1
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0
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5.5k
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Answer: Answer: Retrieve the FASTA transcript sequences of a list of NCBI genes
updated 3.6 years ago by 45k • written 10.6 years ago by ★ 1.8k
1
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1
reply
6.8k
views
Answer: A: Add a seq (the outgroup) to the top of its corresponding gene
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.8k
1
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0
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8.6k
views
Answer: A: Reading gene expression data from an Excel spreadsheet into a python dictionary
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
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0
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6.9k
views
Answer: A: Drug information databases
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.8k
2
votes
1
reply
12k
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Answer: A: MiSeq: R1 vs. R2 reads show big quality difference - is that normal?
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.8k
2
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0
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7.1k
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Answer: A: Trying To Pull Regions From An Online Bam File Without Downloading
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
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2
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6.2k
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Comment: C: Download Pathways associated with species
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
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1
reply
6.2k
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Comment: C: Download Pathways associated with species
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.8k
5
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3
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6.2k
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Answer: A: Download Pathways associated with species
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
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1
reply
7.2k
views
Comment: Comment: What software could be used to calculate substitution rate of a pair of nucleic
updated 4.1 years ago by 45k • written 11.5 years ago by ★ 1.8k
2
votes
2
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7.2k
views
Answer: A: What software could be used to calculate substitution rate of a pair of nucleic
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.8k
10
votes
2
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17k
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Answer: A: Gene-gene Pearson Correlation
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
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0
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6.7k
views
Answer: A: Merging Datasets Together Using Excel
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.8k
1
vote
0
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3.7k
views
Answer: A: BioPython error parsing standard GenBank file
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
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1
reply
12k
views
Comment: C: Extracting subset of records from FASTA/FASTQ files based on exact/pattern match
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.8k
1
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0
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9.2k
views
Answer: A: Visualize / Highlight Specific Nodes In A Taxonomy Tree
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.8k
1
vote
1
reply
12k
views
Comment: C: Extracting subset of records from FASTA/FASTQ files based on exact/pattern match
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
votes
1
reply
12k
views
Comment: C: Extracting subset of records from FASTA/FASTQ files based on exact/pattern match
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
votes
2
replies
25k
views
Answer: A: Variant Calling With Bcftools Call
updated 6.1 years ago by 45k • written 11.6 years ago by ★ 1.8k
0
votes
1
reply
25k
views
Comment: C: Variant Calling With Bcftools Call
updated 6.1 years ago by 45k • written 11.5 years ago by ★ 1.8k
1
vote
0
replies
19k
views
Answer: A: Duplicate Paired-End Illumina Reads
updated 6.2 years ago by 45k • written 11.6 years ago by ★ 1.8k
1
vote
0
replies
9.3k
views
Answer: A: Is there anyone who was a pure biologist?
updated 6.2 years ago by 45k • written 11.5 years ago by ★ 1.8k
4
votes
0
replies
25k
views
Answer: A: how to parse blast output using biopython
updated 7.0 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
votes
0
replies
2.3k
views
Job: Bioinformatics PDRA Opportunity in Environmental' Omics Lab (Water & Environment Research Group, University of Glasgow)
microbiome statistics metagenomics
updated 2.5 years ago by 45k • written 8.1 years ago by ★ 1.8k
0
votes
0
replies
2.3k
views
Job: PhD Studentships @ University of Glasgow [International students can also apply]
phd
updated 2.6 years ago by 45k • written 9.9 years ago by ★ 1.8k
1
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0
replies
2.8k
views
Job: EPSRC CASE Bioinformatics studentship: Development of novel statistics to study the human microbiome
metagenomic
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.8k
2
votes
1
reply
3.5k
views
Job: PhD Project – Development of Novel Algorithms and Tools for Integration of Metagenomics and Metabolomics
Metagenomics
updated 2.8 years ago by 45k • written 10.6 years ago by ★ 1.8k
0
votes
0
replies
3.7k
views
Answer: Answer: How to tell if a RefSeq or UniProt protein identifier is human?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.8k
72
votes
5
replies
15k
views
8 follow
Tutorial: Bioinformatics For Metagenomic Analyses
QC taxonomy metagenomics
updated 3.6 years ago by 45k • written 11.6 years ago by ★ 1.8k
1
vote
0
replies
6.6k
views
Answer: A: Pairwise comparisons between multiple groups with DESeq2
10.6 years ago by umer.zeeshan.ijaz ★ 1.8k
0
votes
0
replies
9.5k
views
Answer: Answer: K-means for non-spherical (non-globular) clusters
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.8k
1
vote
0
replies
9.7k
views
Comment: Comment: Verify if all the components of a pathway are present in a genomes
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.8k
10
votes
1
reply
9.7k
views
Answer: Answer: Verify if all the components of a pathway are present in a genomes
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.8k
6
votes
1
reply
2.9k
views
Answer: A: Predict AA sequence from assembled transcripts
10.7 years ago by umer.zeeshan.ijaz ★ 1.8k
3
votes
2
replies
9.4k
views
Answer: Answer: Frequency of a unique sequence in a fasta file
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.8k
1
vote
1
reply
9.3k
views
Answer: Answer: How to compute physical per-base coverage from WGS paired-end reads?
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.8k
18
votes
6
replies
5.6k
views
Tool: R code for ecological data analysis
next-gen R Metagenomics
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.8k
3
votes
0
replies
5.6k
views
Answer: Answer: R code for ecological data analysis
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.8k
2
votes
1
reply
5.6k
views
Comment: Comment: R code for ecological data analysis
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.8k
0
votes
1
reply
4.8k
views
Answer: Answer: Metagenomic Degenerate Primers Design - How to download multiple gene sequences
updated 4.0 years ago by 45k • written 11.3 years ago by ★ 1.8k
0
votes
1
reply
7.2k
views
Comment: Comment: What software could be used to calculate substitution rate of a pair of nucleic
updated 4.1 years ago by 45k • written 11.5 years ago by ★ 1.8k
0
votes
0
replies
3.1k
views
Comment: C: Search of sequences of interest in the 454 data
11.5 years ago by umer.zeeshan.ijaz ★ 1.8k
0
votes
1
reply
3.1k
views
Comment: C: Search of sequences of interest in the 454 data
11.5 years ago by umer.zeeshan.ijaz ★ 1.8k
1
vote
1
reply
3.1k
views
Answer: A: Search of sequences of interest in the 454 data
11.5 years ago by umer.zeeshan.ijaz ★ 1.8k
0
votes
0
replies
12k
views
Comment: C: Extracting subset of records from FASTA/FASTQ files based on exact/pattern match
11.5 years ago by umer.zeeshan.ijaz ★ 1.8k
1
vote
0
replies
2.2k
views
Tool: Shell Wrappers for EMBOSS utilities
contigs perl metagenomics emboss bash
updated 4.1 years ago by 45k • written 11.5 years ago by ★ 1.8k
8
votes
9
replies
12k
views
Tutorial: Extracting subset of records from FASTA/FASTQ files based on exact/pattern matches of IDs (ONE-LINERS)
fastq fasta
updated 2.7 years ago by 45k • written 11.5 years ago by ★ 1.8k
10
votes
0
replies
6.2k
views
Tool: Shell utilities for QC of FASTQ/FASTA files (based on perl one-liners)
PERL GNUPLOT FASTA FASTQ FastQC
updated 2.3 years ago by 45k • written 11.6 years ago by ★ 1.8k
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