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0
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144
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Cannot Align My Consensus fasta
bcftools consensus alignment variant-calling
updated 5 weeks ago by 44k • written 5 weeks ago by ▴ 50
4
votes
7
replies
1.3k
views
COBS Indexing genomes - understand the output
indexing cobs genomes COBS
updated 6 weeks ago by • 0 • written 2.2 years ago by ▴ 50
0
votes
0
replies
169
views
The best tool for Scaffolding
contigs scaffold assembly spades
7 weeks ago by davidmaimoun ▴ 50
0
votes
2
replies
277
views
Minimum Spanning Tree for SNPs
mst matrix snp distance bowtie2
10 weeks ago by davidmaimoun ▴ 50
3
votes
4
replies
523
views
QC Analysis from Sanger sequencing
qc ab1 sanger
3 months ago by davidmaimoun ▴ 50
2
votes
8
replies
809
views
Blastn for all bacteria genomes; create the db
blast blastn
updated 7 months ago by 145k • written 7 months ago by ▴ 50
1
vote
4
replies
552
views
Blastn - matches with another species
blast blastn
7 months ago by davidmaimoun ▴ 50
0
votes
0
replies
240
views
Shovill running error 256
shovill
updated 8 months ago by 44k • written 8 months ago by ▴ 50
4
votes
8
replies
1.1k
views
Parallelization of task according to the cpu capacity
parallelization cpu
8 months ago by davidmaimoun ▴ 50
4
votes
8
replies
1.8k
views
Docker: Pass reads file form host to container
docker
9 months ago by davidmaimoun ▴ 50
3
votes
9
replies
2.5k
views
Nextflow - Wait for process ending to call the next one without output
nextflow
updated 10 months ago by ▴ 10 • written 13 months ago by ▴ 50
0
votes
4
replies
1.1k
views
Average Coverage after Assembly (Spades)
coverage average assembly
updated 10 months ago by 20k • written 2.1 years ago by ▴ 50
0
votes
2
replies
551
views
Chewbbaca - explanation of the output
chewbbaca
13 months ago by davidmaimoun ▴ 50
3
votes
6
replies
1.7k
views
Find Pathogenic Variants
vcf variant-calling
17 months ago by davidmaimoun ▴ 50
0
votes
0
replies
358
views
Fetching schemes from pubMLST
Fetching pubMLST schemes cgMLST scheme
2.1 years ago by davidmaimoun ▴ 50
16
votes
10
replies
4.6k
views
Nextflow- cannot run bash script from Docker
script bash nextflow from docker
updated 2.1 years ago by 6.7k • written 2.1 years ago by ▴ 50
2
votes
5
replies
1.1k
views
How can I estimate how many ressources needed before running a script?
available ressources cpu cores
2.2 years ago by davidmaimoun ▴ 50
0
votes
0
replies
353
views
POST sequences to pubMLST API
pubmlst restful api
2.2 years ago by davidmaimoun ▴ 50
3
votes
6
replies
1.0k
views
Determine my species from Isolates assemblies
blast
updated 21 months ago by 44k • written 2.2 years ago by ▴ 50
9
votes
14
replies
2.7k
views
6 follow
Downloading a huge amount of Fastq files
fastq
updated 17 months ago by 44k • written 2.2 years ago by ▴ 50
6
votes
15
replies
1.9k
views
The Best Cloud Solution For Genomics
cloud data-sharing genomics workflow
updated 2.2 years ago by 44k • written 2.2 years ago by ▴ 50
0
votes
3
replies
732
views
Build A Spanning Tree From Several Strains
strains wgmlst compare tree spanning
2.4 years ago by davidmaimoun ▴ 50
3
votes
5
replies
1.2k
views
Allele Calling with chewBBaCA
wgmlst cgmlst mlst chewbbaca allele calling
updated 2.4 years ago by ▴ 240 • written 2.4 years ago by ▴ 50
8
votes
4
replies
2.3k
views
Build Phylogenetic Tree from SNPs
SNPs Tree Build Phylogenetic msa
2.4 years ago by davidmaimoun ▴ 50
24 results • Page 1 of 1
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