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Comment: Comment: Why does low-coverage library give more contiguous assembly than high-coverage l
17 months ago by Timotheus ▴ 40
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3
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Why does low-coverage library give more contiguous assembly than high-coverage library?
Illumina SPAdes assembly N50
updated 17 months ago by ▴ 770 • written 17 months ago by ▴ 40
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2
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740
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Geneious can't find all the sequences it needs in the selected file.
bam sam geneious
updated 19 months ago by ▴ 100 • written 20 months ago by ▴ 40
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673
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Comment: Comment: Why do my 'high-quality' variants look like artifacts?
19 months ago by Timotheus ▴ 40
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2
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673
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Why do my 'high-quality' variants look like artifacts?
SNPs vcf alignment variants
19 months ago by Timotheus ▴ 40
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626
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Subsetting a VCF by a logical vector
vcf vcfR R
updated 19 months ago by 11k • written 19 months ago by ▴ 40
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0
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894
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Comment: Comment: Bcftools: filtering by AD as a percentage of DP
21 months ago by Timotheus ▴ 40
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1
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894
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Comment: Comment: Bcftools: filtering by AD as a percentage of DP
21 months ago by Timotheus ▴ 40
1
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3
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894
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Bcftools: filtering by AD as a percentage of DP
bcftools
21 months ago by Timotheus ▴ 40
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0
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895
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Comment: Comment: Counting softmasked bases in a FASTA
21 months ago by Timotheus ▴ 40
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4
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895
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Counting softmasked bases in a FASTA
fasta
21 months ago by Timotheus ▴ 40
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0
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1000
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Comment: Comment: BCFtools: filtering variants by position
21 months ago by Timotheus ▴ 40
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2
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1000
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BCFtools: filtering variants by position
bcftools snps
21 months ago by Timotheus ▴ 40
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516
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Comment: Comment: SNP numbers don't add up to the number of record in a vcf
21 months ago by Timotheus ▴ 40
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2
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516
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SNP numbers don't add up to the number of record in a vcf
bcftools gatk
21 months ago by Timotheus ▴ 40
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Comment: Comment: Centrally installed Braker2 error: AUGUSTUS_CONFIG_PATH/species is not writeable
21 months ago by Timotheus ▴ 40
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3
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Centrally installed Braker2 error: AUGUSTUS_CONFIG_PATH/species is not writeable.
braker2 augustus
updated 21 months ago by 54k • written 21 months ago by ▴ 40
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537
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Comment: Comment: Filtering multiple-samples VCF by genotype with GATK
21 months ago by Timotheus ▴ 40
3
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2
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537
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Filtering multiple-samples VCF by genotype with GATK
GATK SNPs
21 months ago by Timotheus ▴ 40
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0
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997
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Comment: Comment: Reading in input file into a Snakemake pipeline
21 months ago by Timotheus ▴ 40
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1
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997
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Comment: Comment: Reading in input file into a Snakemake pipeline
21 months ago by Timotheus ▴ 40
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4
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997
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Reading in input file into a Snakemake pipeline
snakemake
21 months ago by Timotheus ▴ 40
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1.1k
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Comment: Comment: Tools for rRNA gene annotations
24 months ago by Timotheus ▴ 40
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4
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1.1k
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Tools for rRNA gene annotations
software annotation rRNA
updated 24 months ago by ▴ 110 • written 2.1 years ago by ▴ 40
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