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How to obtain TPM data after batch effect correction from count data obtained using RSEM
STAR RNA-seq Batch RSEM effect
updated 7 months ago by ★ 8.5k • written 7 months ago by ▴ 190
0
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0
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530
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When I want to compare two groups at multiple time points in scRNA-seq datasets, the criteria for the genes to be analyzed
Seurat scRNA-seq
7 months ago by Apprentice ▴ 190
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0
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1.5k
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Comment: Comment: Commands for processing mixed 4-sample scRNA-seq data with cellranger
10 months ago by Apprentice ▴ 190
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1
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1.5k
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Comment: Comment: Commands for processing mixed 4-sample scRNA-seq data with cellranger
10 months ago by Apprentice ▴ 190
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4
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1.5k
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Commands for processing mixed 4-sample scRNA-seq data with cellranger
Cellranger scRNA-seq Chromium
10 months ago by Apprentice ▴ 190
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0
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2.4k
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Comment: Comment: Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
10 months ago by Apprentice ▴ 190
2
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7
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2.4k
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Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
scRNA-seq CellRanger hdWGCNA Seurat
10 months ago by Apprentice ▴ 190
0
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1
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2.4k
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Comment: Comment: Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
11 months ago by Apprentice ▴ 190
0
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0
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2.4k
views
Comment: Comment: Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
11 months ago by Apprentice ▴ 190
0
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1
reply
2.4k
views
Comment: Comment: Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
11 months ago by Apprentice ▴ 190
0
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0
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771
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Comment: Comment: Can I use FDR twice for multiple correction in a two-stage study using omics dat
11 months ago by Apprentice ▴ 190
0
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2
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771
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Can I use FDR twice for multiple correction in a two-stage study using omics data.
statistical omics-data testing RNA-seq
11 months ago by Apprentice ▴ 190
5
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15
replies
8.7k
views
6 follow
Why are there many reads with green color in IGV of RNA-seq data?
rna-seq IGV mapping
updated 19 months ago by • 0 • written 6.4 years ago by ▴ 190
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0
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1.5k
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Comment: Comment: Calculation of λ1000 for a continuous trait
20 months ago by Apprentice ▴ 190
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3
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1.5k
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Calculation of λ1000 for a continuous trait
SNP GWAS inflation
20 months ago by Apprentice ▴ 190
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0
replies
2.9k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
21 months ago by Apprentice ▴ 190
0
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1
reply
2.9k
views
Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
21 months ago by Apprentice ▴ 190
0
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0
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2.9k
views
Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
21 months ago by Apprentice ▴ 190
0
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3
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2.9k
views
Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
21 months ago by Apprentice ▴ 190
7
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15
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2.9k
views
6 follow
I would like to exclude rRNA in RSEM and quantify other genes.
STAR RNA-seq RSEM
updated 21 months ago by ★ 7.8k • written 21 months ago by ▴ 190
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0
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965
views
Comment: Comment: I would like to add a human gene sequence to a mouse reference genome
22 months ago by Apprentice ▴ 190
0
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2
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965
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I would like to add a human gene sequence to a mouse reference genome
reference-genome mouse RNA-seq
updated 22 months ago by 45k • written 22 months ago by ▴ 190
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0
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618
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If the names of miRNAs are the same for different species, are they the same sequence?
miRNA
22 months ago by Apprentice ▴ 190
0
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0
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486
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Method for detecting X-chromosome aneuploidy from SNP array data
SNP aneuploidies
2.1 years ago by Apprentice ▴ 190
0
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1
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1.9k
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Comment: Comment: LD score table for East Asians used for BOLT-LMM
2.2 years ago by Apprentice ▴ 190
2
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3
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1.9k
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LD score table for East Asians used for BOLT-LMM
BOLT-LMM SNP LDSC
updated 2.2 years ago by 5.2k • written 2.2 years ago by ▴ 190
0
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0
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984
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Comment: Comment: Is it possible to detect fusion genes by either stranded or unstranded RNA-seq?
2.2 years ago by Apprentice ▴ 190
2
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2
replies
984
views
Is it possible to detect fusion genes by either stranded or unstranded RNA-seq?
RNA-seq STAR-Fusion
2.2 years ago by Apprentice ▴ 190
0
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0
replies
576
views
PLINK format file for BOLT-LMM
BOLT-LMM SNP
2.2 years ago by Apprentice ▴ 190
0
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0
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2.2k
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Comment: Comment: RSEM uses different gene lengths for each sample.
2.3 years ago by Apprentice ▴ 190
5
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3
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2.2k
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RSEM uses different gene lengths for each sample.
STAR RNA-seq RSEM
2.3 years ago by Apprentice ▴ 190
0
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0
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2.4k
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Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
2.3 years ago by Apprentice ▴ 190
0
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0
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2.4k
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Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
2.3 years ago by Apprentice ▴ 190
0
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1
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2.4k
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Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
2.3 years ago by Apprentice ▴ 190
3
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8
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2.4k
views
Is RSEM required for RNA-seq data analysis using STAR and edgeR?
edgeR RNA-seq STAR
2.3 years ago by Apprentice ▴ 190
0
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0
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549
views
Popcorn using SNPs with extremely low P-value
Popcorn SNP
2.4 years ago by Apprentice ▴ 190
2
votes
1
reply
1.1k
views
PRSice-2 using SNPs with extremely low P-value
PRSice-2 SNP
2.4 years ago by Apprentice ▴ 190
1
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0
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1.1k
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Answer: Answer: PRSice-2 using SNPs with extremely low P-value
2.4 years ago by Apprentice ▴ 190
0
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0
replies
669
views
I want to set the null hypothesis for the test of genetic correlation to rg=1.
correlation LDSC genetic
2.5 years ago by Apprentice ▴ 190
3
votes
3
replies
2.8k
views
Which 1000 genomes 30x files should I use for imputation?
1000genomes imputation SNP
updated 17 months ago by • 0 • written 2.8 years ago by ▴ 190
0
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1
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2.8k
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Comment: Comment: Which 1000 genomes 30x files should I use for imputation?
2.8 years ago by Apprentice ▴ 190
0
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0
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1.4k
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Comment: Comment: I want to identify the version of MethylationEPIC from the idat file.
3.0 years ago by Apprentice ▴ 190
1
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2
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1.4k
views
I want to identify the version of MethylationEPIC from the idat file.
Microarray methylation DNA
3.0 years ago by Apprentice ▴ 190
0
votes
1
reply
881
views
Application of repeated measurement data to missForest
R missForest
3.3 years ago by Apprentice ▴ 190
0
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0
replies
881
views
Answer: Answer: Application to repeated measurement data
3.3 years ago by Apprentice ▴ 190
0
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0
replies
1.0k
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Comment: Comment: Significance of giving read group when using hisat2
3.7 years ago by Apprentice ▴ 190
2
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2
replies
1.0k
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Significance of giving read group when using hisat2
RNA-Seq
3.7 years ago by Apprentice ▴ 190
0
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0
replies
2.1k
views
Comment: Comment: Unable to get all Uniprot IDs corresponding to Ensembl ID
3.7 years ago by Apprentice ▴ 190
5
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3
replies
2.1k
views
Unable to get all Uniprot IDs corresponding to Ensembl ID
Uniprot biomaRt
3.7 years ago by Apprentice ▴ 190
0
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0
replies
1.7k
views
Comment: Comment: Is it possible to infer from miRNA-seq fastq data which species it is obtained f
3.7 years ago by Apprentice ▴ 190
139 results • Page 1 of 3
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