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6
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4
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44k
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Answer: A: How To Generate A Consensus Fasta Sequence From Sam Tools Pileup?
updated 5.7 years ago by 43k • written 13.2 years ago by 33k
8
votes
3
replies
26k
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Answer: A: Disease Associated Snps
updated 5.7 years ago by 43k • written 13.2 years ago by 33k
26
votes
4
replies
72k
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Answer: A: What Is The Best Pipeline For Human Whole Exome Sequencing?
updated 5.7 years ago by 43k • written 13.5 years ago by 33k
4
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0
replies
8.5k
views
Answer: A: Adding An Extra Column To A Vcf File.
updated 5.7 years ago by 43k • written 13.3 years ago by 33k
3
votes
1
reply
3.0k
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Answer: A: Use PacBio FASTQ reads to polish\correct a PacBio Fasta assembly without Quiver
6.9 years ago by lh3 33k
3
votes
0
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5.8k
views
Answer: A: confusion in the DeBruijn Graph
6.9 years ago by lh3 33k
2
votes
1
reply
5.0k
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Answer: A: Software for Tree Visualization
7.0 years ago by lh3 33k
9
votes
0
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6.3k
views
Answer: A: Good practices while dealing with very large datasets
7.0 years ago by lh3 33k
9
votes
1
reply
9.6k
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Answer: A: SRR/ERR/DRR prefixes in SRA - What's the difference?
7.0 years ago by lh3 33k
6
votes
2
replies
13k
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Answer: A: NGS files' shrinkage software: ALAPY Compressor, only fastq files so far =)
7.1 years ago by lh3 33k
9
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0
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7.5k
views
Answer: A: BWA mem output inconsistent on same but re-ordered FASTQ input
7.2 years ago by lh3 33k
1
vote
1
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2.0k
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Answer: A: Why annotations are not encoded using standard informatic format ?
7.4 years ago by lh3 33k
4
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0
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3.5k
views
Answer: A: Should I perform an error correction for an assembly ?
7.5 years ago by lh3 33k
1
vote
0
replies
18k
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Answer: A: How to calculate TPM?
7.6 years ago by lh3 33k
8
votes
2
replies
3.1k
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Answer: A: Can FM Index be built in linear time?
7.7 years ago by lh3 33k
0
votes
0
replies
3.0k
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Answer: A: How I can increase the length of contig in denovo assembly
7.8 years ago by lh3 33k
4
votes
1
reply
4.7k
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Answer: A: diferent contigs chrM
7.8 years ago by lh3 33k
6
votes
4
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14k
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Answer: C: Retrieve a subset of FASTA from large multi-FASTA file
7.9 years ago by lh3 33k
2
votes
1
reply
3.0k
views
Answer: A: insert size discrepencies using bwa backtrack and bwa mem
7.9 years ago by lh3 33k
1
vote
1
reply
3.4k
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Answer: A: Where to download raw HGDP data used for population genetics studies
8.0 years ago by lh3 33k
2
votes
0
replies
2.8k
views
Answer: A: Adding a new gene to a precomputed gene tree ?
8.0 years ago by lh3 33k
0
votes
1
reply
1.9k
views
Answer: A: Genome assembly process
8.0 years ago by lh3 33k
0
votes
1
reply
1.8k
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Answer: A: Coverage/Read Depth per SNP in 1000Genomes
8.0 years ago by lh3 33k
2
votes
0
replies
1.8k
views
Answer: A: AWK Join two files does not work
8.1 years ago by lh3 33k
1
vote
0
replies
2.6k
views
Answer: A: MAPQ distribution to PacBio RSII mapping with "bwa mem -x pacbio" settings
8.1 years ago by lh3 33k
1
vote
0
replies
2.5k
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Answer: A: 1000 genome Phase 3 VCF files are prepared using which human reference genome ,
8.1 years ago by lh3 33k
4
votes
1
reply
3.4k
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Answer: C: Why a true variant is not getting called by Haplotypecaller.
8.1 years ago by lh3 33k
7
votes
3
replies
9.2k
views
Answer: A: Looking for reputable tool to find low complexity regions in FASTQ or BAM files
8.4 years ago by lh3 33k
5
votes
0
replies
5.0k
views
Answer: A: uBAM & metadata - the death of Fastq?
8.4 years ago by lh3 33k
4
votes
1
reply
6.5k
views
Answer: Answer: Why the CEU trio's parents NA12891 and NA12892 are not in 1000 Genomes phase 3
updated 19 months ago by 43k • written 8.6 years ago by 33k
2
votes
1
reply
4.9k
views
Answer: A: 1000 Genome Derived Allele Frequency
8.7 years ago by lh3 33k
5
votes
2
replies
4.7k
views
Answer: A: Hardy-Weinberg assumptions in variant calling
8.7 years ago by lh3 33k
8
votes
1
reply
1.6k
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Answer: C: Fastq size: Why don't we have nucleotide information merged to quality scores?
8.9 years ago by lh3 33k
24
votes
2
replies
27k
views
Answer: Answer: Remove duplicates in fasta file based on ID
updated 15 months ago by 43k • written 9.0 years ago by 33k
2
votes
0
replies
33k
views
Answer: Answer: Help a graduate student going into Bioinformatics looking for a new personal lap
updated 15 months ago by 43k • written 9.0 years ago by 33k
6
votes
1
reply
2.7k
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Answer: Answer: Is there any aligner which supports soft clipping a fixed number of bases from r
updated 22 months ago by 43k • written 9.0 years ago by 33k
6
votes
0
replies
4.1k
views
Answer: Answer: What are most recommended / state-of-the-art whole genome FASTQ datasets for ben
updated 22 months ago by 43k • written 9.1 years ago by 33k
9
votes
0
replies
4.7k
views
Answer: Answer: sam/bam file handling -> new tools?
updated 23 months ago by 43k • written 9.1 years ago by 33k
2
votes
2
replies
2.1k
views
Answer: Answer: replacing 'N' with 'A', 'C', 'G', or 'T' from ABI file (sanger)
updated 2.1 years ago by 43k • written 9.3 years ago by 33k
0
votes
1
reply
5.6k
views
Answer: A: ABBA and BAAB test of admixture (D test)
9.3 years ago by lh3 33k
2
votes
1
reply
39k
views
Answer: A: What Is The Quickest Algorithm For Range Overlap?
9.3 years ago by lh3 33k
2
votes
1
reply
4.9k
views
Answer: Answer: How to copy all fasta-seqs from fasta-files with the seq-lengths between minlen
updated 2.1 years ago by 43k • written 9.3 years ago by 33k
3
votes
1
reply
3.2k
views
Answer: Answer: Why there is huge difference in mapping quality with bwa & bowtie
updated 2.1 years ago by 43k • written 9.3 years ago by 33k
6
votes
2
replies
19k
views
Answer: Answer: Benchmark - Comparison of Different NGS Mappers
updated 2.1 years ago by 43k • written 9.4 years ago by 33k
1
vote
0
replies
3.4k
views
Answer: Answer: Database of common contaminants in human genome assemblies
updated 2.2 years ago by 43k • written 9.4 years ago by 33k
5
votes
1
reply
9.3k
views
Answer: Answer: Principles of Tidy Data (Hadley Wickham) and the VCF format
updated 2.2 years ago by 43k • written 9.4 years ago by 33k
7
votes
0
replies
9.7k
views
Answer: Answer: I want to re-open the old debate: python or perl ?
updated 2.2 years ago by 43k • written 9.5 years ago by 33k
2
votes
0
replies
2.0k
views
Answer: Answer: Avilable better SNPcalling tools (except GATK and Samtools)
updated 2.3 years ago by 43k • written 9.5 years ago by 33k
12
votes
4
replies
17k
views
Answer: Answer: Long read alignment
updated 3.1 years ago by 43k • written 9.5 years ago by 33k
1
vote
1
reply
18k
views
Answer: Answer: Software For Hla Typing Using Ngs?
updated 2.3 years ago by 43k • written 9.5 years ago by 33k
324 results • Page 2 of 7
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