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7.5k
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vcftools Tajima's D calculation
vcftools
tajimasd
selection
updated 3.0 years ago by
Ram
43k • written 4.4 years ago by
biogirl
▴ 210
1
vote
3
replies
1.7k
views
Convert haploid to homozygous diploid
snp
4.5 years ago by
biogirl
▴ 210
0
votes
1
reply
1.2k
views
bcftools merge creates high missingness rate
bcftools
plink
vcftools
4.7 years ago by
biogirl
▴ 210
3
votes
14
replies
2.7k
views
Association test in Plink
plink
GWAS
association
updated 4.7 years ago by
zx8754
11k • written 4.7 years ago by
biogirl
▴ 210
3
votes
9
replies
7.7k
views
PLINK error locus has more than 2 alleles
snps
plink
gwas
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biogirl
▴ 210
2
votes
0
replies
2.7k
views
Masking repeats in your alignment
genome
sequencing
repeats
updated 5.6 years ago by
Biostar
20 • written 7.0 years ago by
biogirl
▴ 210
1
vote
11
replies
2.9k
views
vcftools vcf-merge error
vcftools
vcf-merge
5.6 years ago by
biogirl
▴ 210
7
votes
10
replies
4.7k
views
PSMC using haploid genomes
haploid
genome
PSMC
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
biogirl
▴ 210
2
votes
2
replies
4.0k
views
Linkage disequilibrium decay sanity check
snp
plink
linkage disequilibrium
updated 7.3 years ago by
willgilks
▴ 360 • written 7.4 years ago by
biogirl
▴ 210
13
votes
4
replies
2.7k
views
Analysis past the differentially expressed genes: RNAseq
differential-expression
RNAseq
updated 20 months ago by
Ram
43k • written 8.6 years ago by
biogirl
▴ 210
3
votes
5
replies
2.8k
views
ddRADseq and segregating SNPs
SNPs
RADseq
ddRAD
updated 17 months ago by
Ram
43k • written 8.8 years ago by
biogirl
▴ 210
3
votes
7
replies
5.7k
views
Making a custom reference genome
genome
snp
sequence
updated 15 months ago by
Ram
43k • written 9.0 years ago by
biogirl
▴ 210
4
votes
9
replies
2.6k
views
Non-standard nucleotides in my fast converted from a bam
dna
fasta
next-gen-sequencing
bam
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biogirl
▴ 210
4
votes
6
replies
13k
views
SNPs only output from bcftools
sequencing
snp
bcftools
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
biogirl
▴ 210
0
votes
1
reply
4.7k
views
APE (R) package NJ tree - what's the scale?
APE
Phylogeny
Neighbor-joining
R
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
biogirl
▴ 210
2
votes
2
replies
7.3k
views
Binary SNP matrix into APE (R)
alignment
Phylogenetics
SNP
R
Trees
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
biogirl
▴ 210
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