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3
votes
2
replies
594
views
Estimating Index Hopping
bcl2fastq bclconvert
updated 6 months ago by 20k • written 6 months ago by ▴ 350
0
votes
0
replies
886
views
Comment: Comment: Nextflow: absolute file path gets concatenated?
8 months ago by Eliveri ▴ 350
2
votes
2
replies
886
views
Nextflow: absolute file path gets concatenated?
nextflow
8 months ago by Eliveri ▴ 350
4
votes
2
replies
985
views
Run Nextflow Process in For Loop from Chromosomes 1 through N?
nextflow
updated 9 months ago by 161k • written 9 months ago by ▴ 350
3
votes
2
replies
870
views
Nextflow: how to pass Bam and Bam index as Input Channel?
nextflow bam
updated 9 months ago by 161k • written 9 months ago by ▴ 350
0
votes
0
replies
540
views
Comment: Comment: Identify similarly mapped reads in BAM/SAM?
10 months ago by Eliveri ▴ 350
2
votes
2
replies
540
views
Identify similarly mapped reads in BAM/SAM?
bam igv sam python r
10 months ago by Eliveri ▴ 350
0
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0
replies
1.7k
views
Comment: Comment: Nextflow: No space left on device, process using output directory as input?
13 months ago by Eliveri ▴ 350
0
votes
1
reply
1.7k
views
Comment: Comment: Nextflow: No space left on device, process using output directory as input?
13 months ago by Eliveri ▴ 350
7
votes
6
replies
1.7k
views
Nextflow: No space left on device, process using output directory as input?
nextflow
updated 13 months ago by ▴ 340 • written 13 months ago by ▴ 350
1
vote
0
replies
1.1k
views
Comment: Comment: How do you download from CyVerse using FTP or wget?
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.4k
views
Comment: Comment: Nextflow Gatk DepthOfCoverage: Failure working with the tmp directory
13 months ago by Eliveri ▴ 350
1
vote
2
replies
1.1k
views
Comment: Comment: How do you download from CyVerse using FTP or wget?
13 months ago by Eliveri ▴ 350
5
votes
1
reply
1.1k
views
Answer: Answer: How do you download from CyVerse using FTP or wget?
13 months ago by Eliveri ▴ 350
1
vote
0
replies
824
views
Comment: Comment: Rscript Nextflow Error: unable to load shared object
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.2k
views
Comment: Comment: Samtools equivalent of "CleanSam" Picard GATK?
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.2k
views
Comment: Comment: Samtools equivalent of "CleanSam" Picard GATK?
13 months ago by Eliveri ▴ 350
0
votes
0
replies
878
views
Comment: Comment: SamSort gatk invalid argument / no space left on disk
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.4k
views
Comment: Comment: Running Rscript in Nextflow (Rmd file not found)
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.6k
views
Comment: Comment: How to select or subset process outputs in Nextflow DSL2?
13 months ago by Eliveri ▴ 350
1
vote
0
replies
1.4k
views
Comment: Comment: Nextflow output from different processes mixed up as input in later processes
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.0k
views
Comment: Comment: Allocating memory for samtools sort in nextflow?
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.0k
views
Comment: Comment: Allocating memory for samtools sort in nextflow?
13 months ago by Eliveri ▴ 350
1
vote
0
replies
1.7k
views
Comment: Comment: Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
13 months ago by Eliveri ▴ 350
1
vote
0
replies
1.7k
views
Comment: Comment: Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
13 months ago by Eliveri ▴ 350
1
vote
0
replies
1.2k
views
Comment: Comment: Converting Bam file to Fasta (Zipped)
13 months ago by Eliveri ▴ 350
1
vote
0
replies
1.2k
views
Comment: Comment: Converting Bam file to Fasta (Zipped)
13 months ago by Eliveri ▴ 350
0
votes
1
reply
1.4k
views
Comment: Comment: Nextflow Gatk DepthOfCoverage: Failure working with the tmp directory
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.6k
views
Comment: Comment: Nextflow Rmd render script cannot find input files?
13 months ago by Eliveri ▴ 350
1
vote
0
replies
1.3k
views
Comment: Comment: Fetching UniProt ID Mapping results as TSV using Python?
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.1k
views
Comment: Comment: Nextflow workflow errors when run from Scratch dir?
13 months ago by Eliveri ▴ 350
1
vote
0
replies
1.1k
views
Comment: Comment: Nextflow workflow errors when run from Scratch dir?
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.6k
views
Comment: Comment: Nextflow Rmd render script cannot find input files?
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.3k
views
Comment: Comment: Nextflow: [E::bwa_idx_load_from_disk] fail to locate the index files
13 months ago by Eliveri ▴ 350
5
votes
6
replies
1.6k
views
Nextflow Rmd render script cannot find input files?
render r rmd nextflow
13 months ago by Eliveri ▴ 350
7
votes
7
replies
1.4k
views
Nextflow Gatk DepthOfCoverage: Failure working with the tmp directory
tmp gatk nextflow
13 months ago by Eliveri ▴ 350
1
vote
1
reply
1.4k
views
Answer: Answer: Nextflow Gatk DepthOfCoverage: Failure working with the tmp directory
13 months ago by Eliveri ▴ 350
7
votes
4
replies
1.1k
views
Nextflow workflow errors when run from Scratch dir?
bwa nextflow
13 months ago by Eliveri ▴ 350
7
votes
5
replies
1.3k
views
Nextflow: [E::bwa_idx_load_from_disk] fail to locate the index files
sge bwa nextflow
13 months ago by Eliveri ▴ 350
0
votes
0
replies
1.3k
views
Comment: Comment: Nextflow SGE: [E::bwa_idx_load_from_disk] fail to locate the index files
13 months ago by Eliveri ▴ 350
0
votes
0
replies
2.6k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
13 months ago by Eliveri ▴ 350
1
vote
0
replies
2.6k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
13 months ago by Eliveri ▴ 350
1
vote
1
reply
2.6k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
14 months ago by Eliveri ▴ 350
0
votes
1
reply
2.6k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
14 months ago by Eliveri ▴ 350
9
votes
11
replies
2.6k
views
Nextflow Singularity/Apptainer error: command not found
apptainer singularity nextflow
13 months ago by Eliveri ▴ 350
0
votes
1
reply
2.6k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
14 months ago by Eliveri ▴ 350
2
votes
3
replies
1.3k
views
Fetching UniProt ID Mapping results as TSV using Python?
uniprot python tsv json
13 months ago by Eliveri ▴ 350
0
votes
1
reply
1.3k
views
Answer: Answer: Fetching UniProt ID Mapping results as TSV using Python?
14 months ago by Eliveri ▴ 350
3
votes
3
replies
750
views
Removing (stubborn) new line from Fasta file sequence?
fasta
updated 15 months ago by 11k • written 15 months ago by ▴ 350
0
votes
1
reply
1.2k
views
Comment: Comment: Nextflow R Markdown render output to different directory: Missing output file(s
16 months ago by Eliveri ▴ 350
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