Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
572
views
Comment: Comment: Nextflow: absolute file path gets concatenated?
6 weeks ago by Eliveri ▴ 350
2
votes
2
replies
572
views
Nextflow: absolute file path gets concatenated?
nextflow
6 weeks ago by Eliveri ▴ 350
4
votes
2
replies
459
views
Run Nextflow Process in For Loop from Chromosomes 1 through N?
nextflow
updated 3 months ago by 157k • written 3 months ago by ▴ 350
2
votes
2
replies
390
views
Nextflow: how to pass Bam and Bam index as Input Channel?
nextflow bam
updated 3 months ago by 157k • written 3 months ago by ▴ 350
0
votes
0
replies
370
views
Comment: Comment: Identify similarly mapped reads in BAM/SAM?
3 months ago by Eliveri ▴ 350
2
votes
2
replies
370
views
Identify similarly mapped reads in BAM/SAM?
bam igv sam python r
3 months ago by Eliveri ▴ 350
0
votes
0
replies
1.1k
views
Comment: Comment: Nextflow: No space left on device, process using output directory as input?
6 months ago by Eliveri ▴ 350
0
votes
1
reply
1.1k
views
Comment: Comment: Nextflow: No space left on device, process using output directory as input?
6 months ago by Eliveri ▴ 350
7
votes
6
replies
1.1k
views
Nextflow: No space left on device, process using output directory as input?
nextflow
updated 6 months ago by ▴ 330 • written 6 months ago by ▴ 350
1
vote
0
replies
771
views
Comment: Comment: How do you download from CyVerse using FTP or wget?
6 months ago by Eliveri ▴ 350
0
votes
0
replies
990
views
Comment: Comment: Nextflow Gatk DepthOfCoverage: Failure working with the tmp directory
6 months ago by Eliveri ▴ 350
1
vote
2
replies
771
views
Comment: Comment: How do you download from CyVerse using FTP or wget?
6 months ago by Eliveri ▴ 350
5
votes
1
reply
771
views
Answer: Answer: How do you download from CyVerse using FTP or wget?
6 months ago by Eliveri ▴ 350
1
vote
0
replies
591
views
Comment: Comment: Rscript Nextflow Error: unable to load shared object
6 months ago by Eliveri ▴ 350
0
votes
0
replies
918
views
Comment: Comment: Samtools equivalent of "CleanSam" Picard GATK?
6 months ago by Eliveri ▴ 350
0
votes
0
replies
918
views
Comment: Comment: Samtools equivalent of "CleanSam" Picard GATK?
6 months ago by Eliveri ▴ 350
0
votes
0
replies
608
views
Comment: Comment: SamSort gatk invalid argument / no space left on disk
6 months ago by Eliveri ▴ 350
0
votes
0
replies
918
views
Comment: Comment: Running Rscript in Nextflow (Rmd file not found)
6 months ago by Eliveri ▴ 350
0
votes
0
replies
1.2k
views
Comment: Comment: How to select or subset process outputs in Nextflow DSL2?
6 months ago by Eliveri ▴ 350
1
vote
0
replies
991
views
Comment: Comment: Nextflow output from different processes mixed up as input in later processes
6 months ago by Eliveri ▴ 350
0
votes
0
replies
706
views
Comment: Comment: Allocating memory for samtools sort in nextflow?
6 months ago by Eliveri ▴ 350
0
votes
0
replies
706
views
Comment: Comment: Allocating memory for samtools sort in nextflow?
6 months ago by Eliveri ▴ 350
1
vote
0
replies
1.2k
views
Comment: Comment: Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
6 months ago by Eliveri ▴ 350
1
vote
0
replies
1.2k
views
Comment: Comment: Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
6 months ago by Eliveri ▴ 350
1
vote
0
replies
856
views
Comment: Comment: Converting Bam file to Fasta (Zipped)
6 months ago by Eliveri ▴ 350
1
vote
0
replies
856
views
Comment: Comment: Converting Bam file to Fasta (Zipped)
6 months ago by Eliveri ▴ 350
0
votes
1
reply
990
views
Comment: Comment: Nextflow Gatk DepthOfCoverage: Failure working with the tmp directory
6 months ago by Eliveri ▴ 350
0
votes
0
replies
1.1k
views
Comment: Comment: Nextflow Rmd render script cannot find input files?
6 months ago by Eliveri ▴ 350
1
vote
0
replies
864
views
Comment: Comment: Fetching UniProt ID Mapping results as TSV using Python?
6 months ago by Eliveri ▴ 350
0
votes
0
replies
805
views
Comment: Comment: Nextflow workflow errors when run from Scratch dir?
6 months ago by Eliveri ▴ 350
1
vote
0
replies
805
views
Comment: Comment: Nextflow workflow errors when run from Scratch dir?
6 months ago by Eliveri ▴ 350
0
votes
0
replies
1.1k
views
Comment: Comment: Nextflow Rmd render script cannot find input files?
6 months ago by Eliveri ▴ 350
0
votes
0
replies
845
views
Comment: Comment: Nextflow: [E::bwa_idx_load_from_disk] fail to locate the index files
6 months ago by Eliveri ▴ 350
5
votes
6
replies
1.1k
views
Nextflow Rmd render script cannot find input files?
render r rmd nextflow
6 months ago by Eliveri ▴ 350
7
votes
7
replies
990
views
Nextflow Gatk DepthOfCoverage: Failure working with the tmp directory
tmp gatk nextflow
6 months ago by Eliveri ▴ 350
1
vote
1
reply
990
views
Answer: Answer: Nextflow Gatk DepthOfCoverage: Failure working with the tmp directory
6 months ago by Eliveri ▴ 350
7
votes
4
replies
805
views
Nextflow workflow errors when run from Scratch dir?
bwa nextflow
6 months ago by Eliveri ▴ 350
7
votes
5
replies
845
views
Nextflow: [E::bwa_idx_load_from_disk] fail to locate the index files
sge bwa nextflow
6 months ago by Eliveri ▴ 350
0
votes
0
replies
845
views
Comment: Comment: Nextflow SGE: [E::bwa_idx_load_from_disk] fail to locate the index files
7 months ago by Eliveri ▴ 350
0
votes
0
replies
1.8k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
7 months ago by Eliveri ▴ 350
1
vote
0
replies
1.8k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
7 months ago by Eliveri ▴ 350
1
vote
1
reply
1.8k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
7 months ago by Eliveri ▴ 350
0
votes
1
reply
1.8k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
7 months ago by Eliveri ▴ 350
9
votes
11
replies
1.8k
views
Nextflow Singularity/Apptainer error: command not found
apptainer singularity nextflow
7 months ago by Eliveri ▴ 350
0
votes
1
reply
1.8k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
7 months ago by Eliveri ▴ 350
2
votes
3
replies
864
views
Fetching UniProt ID Mapping results as TSV using Python?
uniprot python tsv json
6 months ago by Eliveri ▴ 350
0
votes
1
reply
864
views
Answer: Answer: Fetching UniProt ID Mapping results as TSV using Python?
7 months ago by Eliveri ▴ 350
3
votes
3
replies
565
views
Removing (stubborn) new line from Fasta file sequence?
fasta
updated 8 months ago by 11k • written 8 months ago by ▴ 350
0
votes
1
reply
943
views
Comment: Comment: Nextflow R Markdown render output to different directory: Missing output file(s
9 months ago by Eliveri ▴ 350
7
votes
3
replies
943
views
Nextflow R Markdown render output to different directory: Missing output file(s)
rstudio r rmarkdown nextflow
updated 9 months ago by 77k • written 9 months ago by ▴ 350
73 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6