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Answer: A: SciClone on WES data
8.4 years ago by Chris Miller 22k
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Answer: A: Using ReadDepth for non-human data
8.4 years ago by Chris Miller 22k
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Answer: A: The meaning of VAF and LOH in sciclone
8.5 years ago by Chris Miller 22k
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Answer: A: How can I make VEP recognize header lines in my VCF?
8.5 years ago by Chris Miller 22k
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3
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How can I make VEP recognize header lines in my VCF?
vcf vep annotation
8.5 years ago by Chris Miller 22k
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Comment: C: How can I make VEP recognize header lines in my VCF?
8.5 years ago by Chris Miller 22k
3
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1
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2.3k
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Answer: A: My translated A.A seq longer than my original Nucleotide seq!! Could someone exp
8.5 years ago by Chris Miller 22k
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3.8k
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Answer: A: Generate column names on the fly R
8.6 years ago by Chris Miller 22k
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1.9k
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Answer: A: bam-readcount values are higher than Mutect results
8.6 years ago by Chris Miller 22k
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3.3k
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Comment: C: Bam-readcount output empty from certain regions (RNA seq bams)
8.6 years ago by Chris Miller 22k
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3.3k
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Answer: A: Bam-readcount output empty from certain regions (RNA seq bams)
8.6 years ago by Chris Miller 22k
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3.1k
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Answer: A: bam-readcount tool: output zero coverage bases
8.6 years ago by Chris Miller 22k
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2.4k
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Answer: A: How to plot mutation hotspot according to mutation counts
8.6 years ago by Chris Miller 22k
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Comment: C: What is Copy Number Variation(CNV) and Alteration(CNA)
8.6 years ago by Chris Miller 22k
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21k
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Comment: C: What is Copy Number Variation(CNV) and Alteration(CNA)
8.6 years ago by Chris Miller 22k
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Answer: A: What is Copy Number Variation(CNV) and Alteration(CNA)
8.6 years ago by Chris Miller 22k
4
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1
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4.2k
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Answer: A: Deciding on a Variant Caller
8.7 years ago by Chris Miller 22k
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2.3k
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Comment: C: bam-readcount error bam_header_read
8.7 years ago by Chris Miller 22k
3
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1
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5.3k
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Answer: A: SomaticSniper VS Varscan2
8.8 years ago by Chris Miller 22k
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4.1k
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Comment: C: Whole Genome Sequences somatic MAF files at TCGA
8.8 years ago by Chris Miller 22k
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2.5k
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Answer: A: Bam-readcounts min-base-quality not giving expected output
8.8 years ago by Chris Miller 22k
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2.6k
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Answer: A: Regions to Exclude and useSexChromosome questions
8.8 years ago by Chris Miller 22k
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5.3k
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Answer: A: Correcting for tumor purity in tumor evolution analysis
8.8 years ago by Chris Miller 22k
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13k
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Comment: C: fastq.gz Error: Not in gzip format
8.9 years ago by Chris Miller 22k
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1
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13k
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Comment: C: fastq.gz Error: Not in gzip format
8.9 years ago by Chris Miller 22k
4
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13k
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Answer: A: fastq.gz Error: Not in gzip format
8.9 years ago by Chris Miller 22k
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13k
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Answer: A: BAM to FASTQ
8.9 years ago by Chris Miller 22k
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4.1k
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Comment: C: How to do INDEL alignment
8.9 years ago by Chris Miller 22k
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4.5k
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Comment: C: BAM to Fastq using picard and others from a desired regions
8.9 years ago by Chris Miller 22k
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2
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4.5k
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Comment: C: BAM to Fastq using picard and others from a desired regions
8.9 years ago by Chris Miller 22k
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1
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2.6k
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Comment: C: How to cite the "BED 12" format ?
8.9 years ago by Chris Miller 22k
2
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1
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4.5k
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Answer: A: BAM to Fastq using picard and others from a desired regions
8.9 years ago by Chris Miller 22k
1
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1
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4.2k
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Comment: C: What is the coverage when allele frequency is < 1?
9.0 years ago by Chris Miller 22k
1
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1
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4.2k
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Comment: C: What is the coverage when allele frequency is < 1?
9.0 years ago by Chris Miller 22k
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5.2k
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Comment: C: samtools sort generates over millions of files
9.0 years ago by Chris Miller 22k
1
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0
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4.2k
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Comment: C: What is the coverage when allele frequency is < 1?
9.0 years ago by Chris Miller 22k
2
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2
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4.2k
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Answer: A: What is the coverage when allele frequency is < 1?
9.0 years ago by Chris Miller 22k
4
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3
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4.8k
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Simulate Paired-End Bisulfite Read Data
simulation paired sequencing short
updated 9.0 years ago by • 0 • written 14.7 years ago by 22k
4
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1
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2.3k
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Answer: A: Are there any online/offline internships in bioinformatics? Stipend does not mat
9.0 years ago by Chris Miller 22k
1
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1
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6.9k
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Comment: C: How to convert bam-readcount output to BED-VAF format
9.0 years ago by Chris Miller 22k
1
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2
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6.9k
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Answer: A: How to convert bam-readcount output to BED-VAF format
9.0 years ago by Chris Miller 22k
0
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0
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5.9k
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Comment: C: sciClone input vaf file?
9.0 years ago by Chris Miller 22k
1
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1
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5.9k
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Comment: C: sciClone input vaf file?
9.0 years ago by Chris Miller 22k
1
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2
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5.9k
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Answer: A: sciClone input vaf file?
9.0 years ago by Chris Miller 22k
0
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2.2k
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Comment: C: Genome Music for Enhancers and binding sites
9.0 years ago by Chris Miller 22k
286
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64
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27k
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44 follow
Forum: Bioinformatics "Cheat Sheet"
cheat sheet
updated 3.2 years ago by 89k • written 14.7 years ago by 22k
0
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Comment: C: sciClone:input data wrong
9.1 years ago by Chris Miller 22k
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1
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4.3k
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Comment: C: sciClone:input data wrong
9.1 years ago by Chris Miller 22k
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0
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4.0k
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Comment: C: Only one cluster in multiple tumor phylogeny samples
9.1 years ago by Chris Miller 22k
1
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1
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4.3k
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Answer: A: sciClone:input data wrong
9.1 years ago by Chris Miller 22k
1,036 results • Page 6 of 21
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