Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
3
replies
1.1k
views
Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
9 months ago by Chris Miller 22k
4
votes
8
replies
1.1k
views
Modeling RNAseq batch effects using a non-case/control technical replicate
batch-correction batch-effect RNA-seq
updated 9 months ago by ★ 16k • written 9 months ago by 22k
0
votes
0
replies
578
views
Answer: Answer: SciClone R package
10 months ago by Chris Miller 22k
0
votes
0
replies
576
views
Comment: Comment: calling somatic variants w/o quality filters
10 months ago by Chris Miller 22k
1
vote
1
reply
686
views
Answer: Answer: TCGA - Is vital_status subject to follow_up duration?
15 months ago by Chris Miller 22k
1
vote
0
replies
658
views
Answer: Answer: Pindel - comparing tumour vs somatic sample
19 months ago by Chris Miller 22k
0
votes
0
replies
956
views
Comment: Comment: sciclone iteration does not converge
2.0 years ago by Chris Miller 22k
0
votes
1
reply
956
views
Answer: Answer: sciclone iteration does not converge
2.0 years ago by Chris Miller 22k
0
votes
0
replies
3.9k
views
Comment: Comment: sciClone input vaf file?
2.1 years ago by Chris Miller 22k
10
votes
1
reply
14k
views
Answer: A: Problem To Understand Copy-Number Values Per Gene Provided By The Broad Institut
updated 3.2 years ago by 41k • written 12.1 years ago by 22k
4
votes
1
reply
24k
views
Comment: A: Extract Base Based On Position From Bam File
updated 3.3 years ago by 41k • written 11.4 years ago by 22k
0
votes
0
replies
1.1k
views
Comment: C: Effects of applying BQSR twice?
3.4 years ago by Chris Miller 22k
1
vote
2
replies
1.1k
views
Effects of applying BQSR twice?
bqsr alignment qualityscores sequencing
updated 3.4 years ago by 35k • written 3.4 years ago by 22k
0
votes
0
replies
1.7k
views
Comment: C: How to distinguish subclone from sciClone or PyClone result
3.6 years ago by Chris Miller 22k
1
vote
0
replies
1.7k
views
Answer: A: How to distinguish subclone from sciClone or PyClone result
3.6 years ago by Chris Miller 22k
1
vote
0
replies
976
views
Answer: A: Sciclone cluster all around y=x
3.6 years ago by Chris Miller 22k
0
votes
0
replies
2.7k
views
Answer: Answer: I have a long list of GI and I want their accession number
updated 19 months ago by 41k • written 7.8 years ago by 22k
0
votes
0
replies
2.2k
views
Comment: C: Is there any journal where you can post small programs to solve very specific ta
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
4
votes
0
replies
2.2k
views
Answer: A: Is there any journal where you can post small programs to solve very specific ta
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
3
votes
1
reply
3.0k
views
Comment: C: brew - yet another fastq utility
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
1
vote
1
reply
2.5k
views
Answer: A: bedtools intersect: keep pairing consistent
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
2
votes
0
replies
1.2k
views
Answer: A: Hot questions in sequencing data accessability
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
1
vote
0
replies
5.2k
views
Comment: C: align shortreads using R
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
2
votes
1
reply
4.2k
views
Comment: C: Why do people not call normal and tumor variant separately for somatic mutation
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
6
votes
1
reply
4.2k
views
Answer: A: Why do people not call normal and tumor variant separately for somatic mutation
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
2
votes
1
reply
3.4k
views
Answer: A: Why is my ADMIXTURE random seed always 43
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
3
votes
2
replies
3.7k
views
Answer: A: Reference and dbSNP incompatibility issue (MuTect2)
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
0
votes
0
replies
2.9k
views
Comment: C: Generating Read Length?
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
0
votes
2
replies
2.9k
views
Comment: C: Generating Read Length?
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
0
votes
1
reply
2.9k
views
Answer: A: Generating Read Length?
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
5
votes
1
reply
7.1k
views
Answer: A: Change chromosome notation to match a new reference
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
17
votes
1
reply
44k
views
Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
0
votes
0
replies
2.5k
views
Comment: C: Mixed opinions on somatic variant calling method
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
2
votes
0
replies
3.0k
views
Comment: C: How can a gene exist on three different chromosomes!?!?
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
3
votes
1
reply
2.5k
views
Answer: A: Mixed opinions on somatic variant calling method
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
0
votes
1
reply
3.0k
views
Answer: A: How can a gene exist on three different chromosomes!?!?
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
2
votes
1
reply
4.2k
views
Answer: A: HiSeq vs GA for RNASeqV2 on TCGA
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
0
votes
0
replies
54k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by 41k • written 9.5 years ago by 22k
2
votes
0
replies
3.6k
views
Comment: C: Calling variants in blood tumor samples without matched normal samples
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
3
votes
0
replies
3.6k
views
Answer: A: Calling variants in blood tumor samples without matched normal samples
updated 3.9 years ago by 41k • written 7.8 years ago by 22k
0
votes
0
replies
4.2k
views
Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 3.9 years ago by 41k • written 9.5 years ago by 22k
0
votes
1
reply
4.2k
views
Answer: A: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 3.9 years ago by 41k • written 9.6 years ago by 22k
1
vote
1
reply
4.1k
views
Answer: C: tbl2asn Permission denied on Mac
updated 3.9 years ago by 41k • written 9.6 years ago by 22k
2
votes
1
reply
2.4k
views
Answer: A: Is it correct to merge TCGA mutation data from multiple centers
updated 3.9 years ago by 41k • written 7.9 years ago by 22k
0
votes
1
reply
3.1k
views
Answer: A: Somatic allele frequency from TCGA in non-coding DNA
updated 3.9 years ago by 41k • written 7.9 years ago by 22k
0
votes
1
reply
2.3k
views
Answer: A: Pathway enrichment for Copy Number Alterations (CNA)
updated 3.9 years ago by 41k • written 7.9 years ago by 22k
3
votes
0
replies
3.3k
views
Answer: A: What is a repetitive region?
updated 3.9 years ago by 41k • written 9.6 years ago by 22k
2
votes
0
replies
2.9k
views
Answer: A: Spliting a dataframe based in a chromosome
updated 3.9 years ago by 41k • written 9.6 years ago by 22k
0
votes
0
replies
13k
views
Comment: C: CNV analysis tool on exome data for NGS
updated 3.9 years ago by 41k • written 9.6 years ago by 22k
0
votes
1
reply
1.5k
views
Comment: C: SubcloneSeeker SNP import from flat file
updated 3.9 years ago by 41k • written 7.9 years ago by 22k
1,036 results • Page 1 of 21
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6