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0
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3
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
2.3 years ago by Chris Miller 22k
4
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8
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2.1k
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Modeling RNAseq batch effects using a non-case/control technical replicate
batch-correction batch-effect RNA-seq
updated 2.3 years ago by ★ 18k • written 2.3 years ago by 22k
0
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0
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1.1k
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Answer: Answer: SciClone R package
2.4 years ago by Chris Miller 22k
0
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0
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1.1k
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Comment: Comment: calling somatic variants w/o quality filters
2.4 years ago by Chris Miller 22k
1
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1
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1.4k
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Answer: Answer: TCGA - Is vital_status subject to follow_up duration?
2.7 years ago by Chris Miller 22k
1
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0
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1.3k
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Answer: Answer: Pindel - comparing tumour vs somatic sample
3.1 years ago by Chris Miller 22k
0
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0
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1.6k
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Comment: Comment: sciclone iteration does not converge
3.5 years ago by Chris Miller 22k
0
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1
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1.6k
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Answer: Answer: sciclone iteration does not converge
3.5 years ago by Chris Miller 22k
0
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0
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5.2k
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Comment: Comment: sciClone input vaf file?
3.5 years ago by Chris Miller 22k
10
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1
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15k
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Answer: A: Problem To Understand Copy-Number Values Per Gene Provided By The Broad Institut
updated 4.7 years ago by 45k • written 13.6 years ago by 22k
4
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1
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29k
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Comment: A: Extract Base Based On Position From Bam File
updated 4.7 years ago by 45k • written 12.9 years ago by 22k
0
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0
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1.6k
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Comment: C: Effects of applying BQSR twice?
4.9 years ago by Chris Miller 22k
1
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2
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1.6k
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Effects of applying BQSR twice?
bqsr alignment qualityscores sequencing
updated 4.9 years ago by 35k • written 4.9 years ago by 22k
0
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0
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2.3k
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Comment: C: How to distinguish subclone from sciClone or PyClone result
5.1 years ago by Chris Miller 22k
1
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0
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2.3k
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Answer: A: How to distinguish subclone from sciClone or PyClone result
5.1 years ago by Chris Miller 22k
1
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0
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1.4k
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Answer: A: Sciclone cluster all around y=x
5.1 years ago by Chris Miller 22k
0
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0
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3.2k
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Answer: Answer: I have a long list of GI and I want their accession number
updated 3.1 years ago by 45k • written 9.3 years ago by 22k
0
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0
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2.9k
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Comment: C: Is there any journal where you can post small programs to solve very specific ta
updated 5.3 years ago by 45k • written 9.3 years ago by 22k
4
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0
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2.9k
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Answer: A: Is there any journal where you can post small programs to solve very specific ta
updated 5.3 years ago by 45k • written 9.3 years ago by 22k
3
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1
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4.9k
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Comment: C: brew - yet another fastq utility
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
1
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1
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3.6k
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Answer: A: bedtools intersect: keep pairing consistent
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
2
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0
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1.6k
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Answer: A: Hot questions in sequencing data accessability
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
1
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0
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6.1k
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Comment: C: align shortreads using R
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
2
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1
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5.1k
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Comment: C: Why do people not call normal and tumor variant separately for somatic mutation
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
6
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1
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5.1k
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Answer: A: Why do people not call normal and tumor variant separately for somatic mutation
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
2
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1
reply
4.3k
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Answer: A: Why is my ADMIXTURE random seed always 43
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
3
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2
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4.5k
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Answer: A: Reference and dbSNP incompatibility issue (MuTect2)
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
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0
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4.3k
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Comment: C: Generating Read Length?
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
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2
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4.3k
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Comment: C: Generating Read Length?
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
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1
reply
4.3k
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Answer: A: Generating Read Length?
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
5
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1
reply
8.2k
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Answer: A: Change chromosome notation to match a new reference
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
17
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1
reply
49k
views
Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
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0
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3.8k
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Comment: C: Mixed opinions on somatic variant calling method
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
2
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0
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3.8k
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Comment: C: How can a gene exist on three different chromosomes!?!?
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
3
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1
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3.8k
views
Answer: A: Mixed opinions on somatic variant calling method
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
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1
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3.8k
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Answer: A: How can a gene exist on three different chromosomes!?!?
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
2
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1
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5.4k
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Answer: A: HiSeq vs GA for RNASeqV2 on TCGA
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
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0
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78k
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Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 5.4 years ago by 45k • written 11.0 years ago by 22k
2
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0
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4.1k
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Comment: C: Calling variants in blood tumor samples without matched normal samples
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
3
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0
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4.1k
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Answer: A: Calling variants in blood tumor samples without matched normal samples
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
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0
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5.2k
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Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 5.4 years ago by 45k • written 11.0 years ago by 22k
0
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1
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5.2k
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Answer: A: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 5.4 years ago by 45k • written 11.0 years ago by 22k
1
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1
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4.8k
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Answer: C: tbl2asn Permission denied on Mac
updated 5.4 years ago by 45k • written 11.1 years ago by 22k
2
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1
reply
3.1k
views
Answer: A: Is it correct to merge TCGA mutation data from multiple centers
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
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1
reply
4.3k
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Answer: A: Somatic allele frequency from TCGA in non-coding DNA
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
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1
reply
2.7k
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Answer: A: Pathway enrichment for Copy Number Alterations (CNA)
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
3
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0
replies
3.9k
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Answer: A: What is a repetitive region?
updated 5.4 years ago by 45k • written 11.1 years ago by 22k
2
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0
replies
3.4k
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Answer: A: Spliting a dataframe based in a chromosome
updated 5.4 years ago by 45k • written 11.1 years ago by 22k
0
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0
replies
15k
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Comment: C: CNV analysis tool on exome data for NGS
updated 5.4 years ago by 45k • written 11.1 years ago by 22k
0
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1
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1.9k
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Comment: C: SubcloneSeeker SNP import from flat file
updated 5.4 years ago by 45k • written 9.4 years ago by 22k
1,036 results • Page 1 of 21
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