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10
votes
1
reply
12k
views
Answer: A: Problem To Understand Copy-Number Values Per Gene Provided By The Broad Institut
updated 7 months ago by 32k • written 9.5 years ago by 21k
4
votes
1
reply
15k
views
Comment: A: Extract Base Based On Position From Bam File
updated 7 months ago by 32k • written 8.8 years ago by 21k
0
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0
replies
267
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Comment: C: Effects of applying BQSR twice?
9 months ago by Chris Miller 21k
1
vote
2
replies
267
views
Effects of applying BQSR twice?
bqsr alignment qualityscores sequencing
updated 9 months ago by 32k • written 9 months ago by 21k
0
votes
0
replies
631
views
Comment: C: How to distinguish subclone from sciClone or PyClone result
11 months ago by Chris Miller 21k
1
vote
0
replies
631
views
Answer: A: How to distinguish subclone from sciClone or PyClone result
11 months ago by Chris Miller 21k
1
vote
0
replies
344
views
Answer: A: Sciclone cluster all around y=x
11 months ago by Chris Miller 21k
0
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0
replies
1.7k
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Answer: A: I have a long list of GI and I want their accession number
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
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0
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1.5k
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Comment: C: Is there any journal where you can post small programs to solve very specific ta
updated 15 months ago by 32k • written 5.2 years ago by 21k
4
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0
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1.5k
views
Answer: A: Is there any journal where you can post small programs to solve very specific ta
updated 15 months ago by 32k • written 5.2 years ago by 21k
3
votes
1
reply
1.5k
views
Comment: C: brew - yet another fastq utility
updated 15 months ago by 32k • written 5.2 years ago by 21k
1
vote
1
reply
1.5k
views
Answer: A: bedtools intersect: keep pairing consistent
updated 15 months ago by 32k • written 5.2 years ago by 21k
2
votes
0
replies
790
views
Answer: A: Hot questions in sequencing data accessability
updated 15 months ago by 32k • written 5.2 years ago by 21k
1
vote
0
replies
3.8k
views
Comment: C: align shortreads using R
updated 15 months ago by 32k • written 5.2 years ago by 21k
2
votes
1
reply
3.3k
views
Comment: C: Why do people not call normal and tumor variant separately for somatic mutation
updated 15 months ago by 32k • written 5.2 years ago by 21k
6
votes
1
reply
3.3k
views
Answer: A: Why do people not call normal and tumor variant separately for somatic mutation
updated 15 months ago by 32k • written 5.2 years ago by 21k
2
votes
1
reply
2.1k
views
Answer: A: Why is my ADMIXTURE random seed always 43
updated 15 months ago by 32k • written 5.2 years ago by 21k
3
votes
2
replies
2.7k
views
Answer: A: Reference and dbSNP incompatibility issue (MuTect2)
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
votes
0
replies
1.9k
views
Comment: C: Generating Read Length?
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
votes
2
replies
1.9k
views
Comment: C: Generating Read Length?
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
votes
1
reply
1.9k
views
Answer: A: Generating Read Length?
updated 15 months ago by 32k • written 5.2 years ago by 21k
5
votes
1
reply
4.6k
views
Answer: A: Change chromosome notation to match a new reference
updated 15 months ago by 32k • written 5.2 years ago by 21k
17
votes
1
reply
34k
views
Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
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0
replies
1.3k
views
Comment: C: Mixed opinions on somatic variant calling method
updated 15 months ago by 32k • written 5.2 years ago by 21k
2
votes
0
replies
2.0k
views
Comment: C: How can a gene exist on three different chromosomes!?!?
updated 15 months ago by 32k • written 5.2 years ago by 21k
3
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1
reply
1.3k
views
Answer: A: Mixed opinions on somatic variant calling method
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
votes
1
reply
2.0k
views
Answer: A: How can a gene exist on three different chromosomes!?!?
updated 15 months ago by 32k • written 5.2 years ago by 21k
2
votes
1
reply
2.7k
views
Answer: A: HiSeq vs GA for RNASeqV2 on TCGA
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
votes
0
replies
35k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 15 months ago by 32k • written 6.9 years ago by 21k
2
votes
0
replies
2.7k
views
Comment: C: Calling variants in blood tumor samples without matched normal samples
updated 15 months ago by 32k • written 5.2 years ago by 21k
3
votes
0
replies
2.7k
views
Answer: A: Calling variants in blood tumor samples without matched normal samples
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
votes
0
replies
3.2k
views
Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 15 months ago by 32k • written 6.9 years ago by 21k
0
votes
1
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3.2k
views
Answer: A: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 15 months ago by 32k • written 6.9 years ago by 21k
1
vote
1
reply
3.1k
views
Answer: C: tbl2asn Permission denied on Mac
updated 15 months ago by 32k • written 7.0 years ago by 21k
2
votes
1
reply
1.5k
views
Answer: A: Is it correct to merge TCGA mutation data from multiple centers
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
votes
1
reply
2.0k
views
Answer: A: Somatic allele frequency from TCGA in non-coding DNA
updated 15 months ago by 32k • written 5.2 years ago by 21k
0
votes
1
reply
1.6k
views
Answer: A: Pathway enrichment for Copy Number Alterations (CNA)
updated 15 months ago by 32k • written 5.2 years ago by 21k
3
votes
0
replies
2.5k
views
Answer: A: What is a repetitive region?
updated 15 months ago by 32k • written 7.0 years ago by 21k
2
votes
0
replies
2.2k
views
Answer: A: Spliting a dataframe based in a chromosome
updated 15 months ago by 32k • written 7.0 years ago by 21k
0
votes
0
replies
11k
views
Comment: C: CNV analysis tool on exome data for NGS
updated 16 months ago by 32k • written 7.0 years ago by 21k
0
votes
1
reply
955
views
Comment: C: SubcloneSeeker SNP import from flat file
updated 16 months ago by 32k • written 5.3 years ago by 21k
1
vote
0
replies
3.0k
views
Comment: C: bioinformatics conference ranking
updated 16 months ago by 32k • written 5.3 years ago by 21k
1
vote
0
replies
2.2k
views
Comment: C: Help with "sciClone" process and output
updated 16 months ago by 32k • written 5.3 years ago by 21k
4
votes
1
reply
2.2k
views
Answer: A: Help with "sciClone" process and output
updated 16 months ago by 32k • written 5.3 years ago by 21k
2
votes
1
reply
3.5k
views
Answer: A: How To Get The Number Of Samples And Sample Tcga Id'S That Are Reported In Tcga
updated 16 months ago by 32k • written 7.2 years ago by 21k
0
votes
0
replies
3.9k
views
Comment: C: Identifying FLT3-ITD with Pindel
updated 16 months ago by 32k • written 5.3 years ago by 21k
0
votes
1
reply
3.9k
views
Comment: C: Identifying FLT3-ITD with Pindel
updated 16 months ago by 32k • written 5.3 years ago by 21k
2
votes
3
replies
15k
views
Answer: A: Sam To Bam Conversion Reference Fasta File
updated 16 months ago by 32k • written 9.1 years ago by 21k
2
votes
0
replies
7.1k
views
Comment: C: Figure Of Diminishing Sequencing Costs
updated 16 months ago by 32k • written 10.4 years ago by 21k
0
votes
0
replies
2.9k
views
Comment: C: Annotating gene fusion predictions
updated 16 months ago by 32k • written 5.4 years ago by 21k
1,032 results • Page 1 of 21
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