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0
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3
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657
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
5 weeks ago by Chris Miller 22k
4
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8
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657
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Modeling RNAseq batch effects using a non-case/control technical replicate
batch-correction batch-effect RNA-seq
updated 5 weeks ago by ★ 14k • written 5 weeks ago by 22k
0
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0
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310
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Answer: Answer: SciClone R package
11 weeks ago by Chris Miller 22k
0
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0
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371
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Comment: Comment: calling somatic variants w/o quality filters
11 weeks ago by Chris Miller 22k
1
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1
reply
399
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Answer: Answer: TCGA - Is vital_status subject to follow_up duration?
7 months ago by Chris Miller 22k
1
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0
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420
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Answer: Answer: Pindel - comparing tumour vs somatic sample
11 months ago by Chris Miller 22k
0
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0
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742
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Comment: Comment: sciclone iteration does not converge
16 months ago by Chris Miller 22k
0
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1
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742
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Answer: Answer: sciclone iteration does not converge
16 months ago by Chris Miller 22k
0
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0
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3.5k
views
Comment: Comment: sciClone input vaf file?
16 months ago by Chris Miller 22k
10
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1
reply
14k
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Answer: A: Problem To Understand Copy-Number Values Per Gene Provided By The Broad Institut
updated 2.6 years ago by 38k • written 11.4 years ago by 22k
4
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1
reply
21k
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Comment: A: Extract Base Based On Position From Bam File
updated 2.6 years ago by 38k • written 10.8 years ago by 22k
0
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0
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918
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Comment: C: Effects of applying BQSR twice?
2.7 years ago by Chris Miller 22k
1
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2
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918
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Effects of applying BQSR twice?
bqsr alignment qualityscores sequencing
updated 2.7 years ago by 34k • written 2.7 years ago by 22k
0
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0
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1.5k
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Comment: C: How to distinguish subclone from sciClone or PyClone result
2.9 years ago by Chris Miller 22k
1
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0
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1.5k
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Answer: A: How to distinguish subclone from sciClone or PyClone result
2.9 years ago by Chris Miller 22k
1
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0
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819
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Answer: A: Sciclone cluster all around y=x
2.9 years ago by Chris Miller 22k
0
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0
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2.5k
views
Answer: Answer: I have a long list of GI and I want their accession number
updated 11 months ago by 38k • written 7.1 years ago by 22k
0
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0
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2.0k
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Comment: C: Is there any journal where you can post small programs to solve very specific ta
updated 3.2 years ago by 38k • written 7.1 years ago by 22k
4
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0
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2.0k
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Answer: A: Is there any journal where you can post small programs to solve very specific ta
updated 3.2 years ago by 38k • written 7.1 years ago by 22k
3
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1
reply
2.5k
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Comment: C: brew - yet another fastq utility
updated 3.2 years ago by 38k • written 7.1 years ago by 22k
1
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1
reply
2.2k
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Answer: A: bedtools intersect: keep pairing consistent
updated 3.2 years ago by 38k • written 7.1 years ago by 22k
2
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0
replies
1.1k
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Answer: A: Hot questions in sequencing data accessability
updated 3.2 years ago by 38k • written 7.1 years ago by 22k
1
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0
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4.9k
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Comment: C: align shortreads using R
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
2
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1
reply
3.9k
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Comment: C: Why do people not call normal and tumor variant separately for somatic mutation
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
6
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1
reply
3.9k
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Answer: A: Why do people not call normal and tumor variant separately for somatic mutation
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
2
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1
reply
3.0k
views
Answer: A: Why is my ADMIXTURE random seed always 43
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
3
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2
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3.4k
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Answer: A: Reference and dbSNP incompatibility issue (MuTect2)
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
0
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0
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2.6k
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Comment: C: Generating Read Length?
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
0
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2
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2.6k
views
Comment: C: Generating Read Length?
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
0
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1
reply
2.6k
views
Answer: A: Generating Read Length?
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
5
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1
reply
6.5k
views
Answer: A: Change chromosome notation to match a new reference
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
17
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1
reply
41k
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Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
0
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0
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2.1k
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Comment: C: Mixed opinions on somatic variant calling method
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
2
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0
replies
2.7k
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Comment: C: How can a gene exist on three different chromosomes!?!?
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
3
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1
reply
2.1k
views
Answer: A: Mixed opinions on somatic variant calling method
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
0
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1
reply
2.7k
views
Answer: A: How can a gene exist on three different chromosomes!?!?
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
2
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1
reply
3.9k
views
Answer: A: HiSeq vs GA for RNASeqV2 on TCGA
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
0
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0
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48k
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Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.2 years ago by 38k • written 8.9 years ago by 22k
2
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0
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3.4k
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Comment: C: Calling variants in blood tumor samples without matched normal samples
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
3
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0
replies
3.4k
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Answer: A: Calling variants in blood tumor samples without matched normal samples
updated 3.2 years ago by 38k • written 7.2 years ago by 22k
0
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0
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3.9k
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Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 3.2 years ago by 38k • written 8.9 years ago by 22k
0
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1
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3.9k
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Answer: A: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 3.2 years ago by 38k • written 8.9 years ago by 22k
1
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1
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3.8k
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Answer: C: tbl2asn Permission denied on Mac
updated 3.3 years ago by 38k • written 8.9 years ago by 22k
2
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1
reply
2.1k
views
Answer: A: Is it correct to merge TCGA mutation data from multiple centers
updated 3.3 years ago by 38k • written 7.2 years ago by 22k
0
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1
reply
2.7k
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Answer: A: Somatic allele frequency from TCGA in non-coding DNA
updated 3.3 years ago by 38k • written 7.2 years ago by 22k
0
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1
reply
2.1k
views
Answer: A: Pathway enrichment for Copy Number Alterations (CNA)
updated 3.3 years ago by 38k • written 7.2 years ago by 22k
3
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0
replies
3.1k
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Answer: A: What is a repetitive region?
updated 3.3 years ago by 38k • written 9.0 years ago by 22k
2
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0
replies
2.8k
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Answer: A: Spliting a dataframe based in a chromosome
updated 3.3 years ago by 38k • written 9.0 years ago by 22k
0
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0
replies
12k
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Comment: C: CNV analysis tool on exome data for NGS
updated 3.3 years ago by 38k • written 8.9 years ago by 22k
0
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1
reply
1.4k
views
Comment: C: SubcloneSeeker SNP import from flat file
updated 3.3 years ago by 38k • written 7.2 years ago by 22k
1,036 results • Page 1 of 21
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