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answers
comments
1
vote
0
replies
200
views
Answer:
Answer: Pindel - comparing tumour vs somatic sample
26 days ago by
Chris Miller
22k
0
votes
0
replies
518
views
Comment:
Comment: sciclone iteration does not converge
6 months ago by
Chris Miller
22k
0
votes
1
reply
518
views
Answer:
Answer: sciclone iteration does not converge
6 months ago by
Chris Miller
22k
0
votes
0
replies
3.0k
views
Comment:
Comment: sciClone input vaf file?
6 months ago by
Chris Miller
22k
10
votes
1
reply
13k
views
Answer:
A: Problem To Understand Copy-Number Values Per Gene Provided By The Broad Institut
updated 20 months ago by
Ram
36k • written 10.6 years ago by
Chris Miller
22k
4
votes
1
reply
18k
views
Comment:
A: Extract Base Based On Position From Bam File
updated 21 months ago by
Ram
36k • written 9.9 years ago by
Chris Miller
22k
0
votes
0
replies
667
views
Comment:
C: Effects of applying BQSR twice?
22 months ago by
Chris Miller
22k
1
vote
2
replies
667
views
Effects of applying BQSR twice?
bqsr
alignment
qualityscores
sequencing
updated 22 months ago by
h.mon
34k • written 22 months ago by
Chris Miller
22k
0
votes
0
replies
1.2k
views
Comment:
C: How to distinguish subclone from sciClone or PyClone result
2.1 years ago by
Chris Miller
22k
1
vote
0
replies
1.2k
views
Answer:
A: How to distinguish subclone from sciClone or PyClone result
2.1 years ago by
Chris Miller
22k
1
vote
0
replies
615
views
Answer:
A: Sciclone cluster all around y=x
2.1 years ago by
Chris Miller
22k
0
votes
0
replies
2.2k
views
Answer:
Answer: I have a long list of GI and I want their accession number
updated 6 weeks ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
0
replies
1.8k
views
Comment:
C: Is there any journal where you can post small programs to solve very specific ta
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
4
votes
0
replies
1.8k
views
Answer:
A: Is there any journal where you can post small programs to solve very specific ta
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
3
votes
1
reply
2.0k
views
Comment:
C: brew - yet another fastq utility
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
1
vote
1
reply
1.8k
views
Answer:
A: bedtools intersect: keep pairing consistent
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
2
votes
0
replies
927
views
Answer:
A: Hot questions in sequencing data accessability
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
1
vote
0
replies
4.5k
views
Comment:
C: align shortreads using R
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
2
votes
1
reply
3.7k
views
Comment:
C: Why do people not call normal and tumor variant separately for somatic mutation
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
6
votes
1
reply
3.7k
views
Answer:
A: Why do people not call normal and tumor variant separately for somatic mutation
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
2
votes
1
reply
2.7k
views
Answer:
A: Why is my ADMIXTURE random seed always 43
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
3
votes
2
replies
3.0k
views
Answer:
A: Reference and dbSNP incompatibility issue (MuTect2)
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
0
replies
2.3k
views
Comment:
C: Generating Read Length?
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
2
replies
2.3k
views
Comment:
C: Generating Read Length?
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
1
reply
2.3k
views
Answer:
A: Generating Read Length?
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
5
votes
1
reply
5.6k
views
Answer:
A: Change chromosome notation to match a new reference
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
17
votes
1
reply
38k
views
Answer:
A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
0
replies
1.8k
views
Comment:
C: Mixed opinions on somatic variant calling method
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
2
votes
0
replies
2.4k
views
Comment:
C: How can a gene exist on three different chromosomes!?!?
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
3
votes
1
reply
1.8k
views
Answer:
A: Mixed opinions on somatic variant calling method
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
1
reply
2.4k
views
Answer:
A: How can a gene exist on three different chromosomes!?!?
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
2
votes
1
reply
3.4k
views
Answer:
A: HiSeq vs GA for RNASeqV2 on TCGA
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
0
replies
42k
views
Comment:
C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 2.4 years ago by
Ram
36k • written 8.0 years ago by
Chris Miller
22k
2
votes
0
replies
3.1k
views
Comment:
C: Calling variants in blood tumor samples without matched normal samples
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
3
votes
0
replies
3.1k
views
Answer:
A: Calling variants in blood tumor samples without matched normal samples
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
0
replies
3.6k
views
Comment:
C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 2.4 years ago by
Ram
36k • written 8.0 years ago by
Chris Miller
22k
0
votes
1
reply
3.6k
views
Answer:
A: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 2.4 years ago by
Ram
36k • written 8.0 years ago by
Chris Miller
22k
1
vote
1
reply
3.5k
views
Answer:
C: tbl2asn Permission denied on Mac
updated 2.4 years ago by
Ram
36k • written 8.1 years ago by
Chris Miller
22k
2
votes
1
reply
1.9k
views
Answer:
A: Is it correct to merge TCGA mutation data from multiple centers
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
1
reply
2.3k
views
Answer:
A: Somatic allele frequency from TCGA in non-coding DNA
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
0
votes
1
reply
1.9k
views
Answer:
A: Pathway enrichment for Copy Number Alterations (CNA)
updated 2.4 years ago by
Ram
36k • written 6.3 years ago by
Chris Miller
22k
3
votes
0
replies
2.8k
views
Answer:
A: What is a repetitive region?
updated 2.4 years ago by
Ram
36k • written 8.1 years ago by
Chris Miller
22k
2
votes
0
replies
2.5k
views
Answer:
A: Spliting a dataframe based in a chromosome
updated 2.4 years ago by
Ram
36k • written 8.1 years ago by
Chris Miller
22k
0
votes
0
replies
12k
views
Comment:
C: CNV analysis tool on exome data for NGS
updated 2.4 years ago by
Ram
36k • written 8.1 years ago by
Chris Miller
22k
0
votes
1
reply
1.2k
views
Comment:
C: SubcloneSeeker SNP import from flat file
updated 2.4 years ago by
Ram
36k • written 6.4 years ago by
Chris Miller
22k
1
vote
0
replies
3.3k
views
Comment:
C: bioinformatics conference ranking
updated 2.4 years ago by
Ram
36k • written 6.4 years ago by
Chris Miller
22k
1
vote
0
replies
2.6k
views
Comment:
C: Help with "sciClone" process and output
updated 2.4 years ago by
Ram
36k • written 6.4 years ago by
Chris Miller
22k
4
votes
1
reply
2.6k
views
Answer:
A: Help with "sciClone" process and output
updated 2.4 years ago by
Ram
36k • written 6.4 years ago by
Chris Miller
22k
2
votes
1
reply
4.0k
views
Answer:
A: How To Get The Number Of Samples And Sample Tcga Id'S That Are Reported In Tcga
updated 2.4 years ago by
Ram
36k • written 8.3 years ago by
Chris Miller
22k
0
votes
0
replies
4.8k
views
Comment:
C: Identifying FLT3-ITD with Pindel
updated 2.4 years ago by
Ram
36k • written 6.4 years ago by
Chris Miller
22k
1,031 results • Page
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