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Answer: Answer: SciClone R package
20 months ago by Chris Miller 22k
1
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1
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992
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Answer: Answer: TCGA - Is vital_status subject to follow_up duration?
2.0 years ago by Chris Miller 22k
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0
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973
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Answer: Answer: Pindel - comparing tumour vs somatic sample
2.4 years ago by Chris Miller 22k
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1
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1.3k
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Answer: Answer: sciclone iteration does not converge
2.8 years ago by Chris Miller 22k
10
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1
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15k
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Answer: A: Problem To Understand Copy-Number Values Per Gene Provided By The Broad Institut
updated 4.0 years ago by 44k • written 12.9 years ago by 22k
1
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0
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2.0k
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Answer: A: How to distinguish subclone from sciClone or PyClone result
4.4 years ago by Chris Miller 22k
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0
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1.1k
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Answer: A: Sciclone cluster all around y=x
4.4 years ago by Chris Miller 22k
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0
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3.0k
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Answer: Answer: I have a long list of GI and I want their accession number
updated 2.4 years ago by 44k • written 8.6 years ago by 22k
4
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0
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2.5k
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Answer: A: Is there any journal where you can post small programs to solve very specific ta
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
1
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1
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3.0k
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Answer: A: bedtools intersect: keep pairing consistent
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
2
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0
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1.3k
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Answer: A: Hot questions in sequencing data accessability
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
6
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1
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4.6k
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Answer: A: Why do people not call normal and tumor variant separately for somatic mutation
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
2
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1
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3.8k
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Answer: A: Why is my ADMIXTURE random seed always 43
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
3
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2
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4.1k
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Answer: A: Reference and dbSNP incompatibility issue (MuTect2)
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
0
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1
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3.6k
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Answer: A: Generating Read Length?
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
5
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1
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7.7k
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Answer: A: Change chromosome notation to match a new reference
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
17
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1
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46k
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Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
3
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1
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3.1k
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Answer: A: Mixed opinions on somatic variant calling method
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
0
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1
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3.4k
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Answer: A: How can a gene exist on three different chromosomes!?!?
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
2
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1
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4.7k
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Answer: A: HiSeq vs GA for RNASeqV2 on TCGA
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
3
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0
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3.8k
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Answer: A: Calling variants in blood tumor samples without matched normal samples
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
0
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1
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4.7k
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Answer: A: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 4.7 years ago by 44k • written 10.3 years ago by 22k
1
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1
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4.4k
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Answer: C: tbl2asn Permission denied on Mac
updated 4.7 years ago by 44k • written 10.4 years ago by 22k
2
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1
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2.7k
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Answer: A: Is it correct to merge TCGA mutation data from multiple centers
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
0
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1
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3.6k
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Answer: A: Somatic allele frequency from TCGA in non-coding DNA
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
0
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1
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2.5k
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Answer: A: Pathway enrichment for Copy Number Alterations (CNA)
updated 4.7 years ago by 44k • written 8.6 years ago by 22k
3
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0
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3.6k
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Answer: A: What is a repetitive region?
updated 4.7 years ago by 44k • written 10.4 years ago by 22k
2
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0
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3.1k
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Answer: A: Spliting a dataframe based in a chromosome
updated 4.7 years ago by 44k • written 10.4 years ago by 22k
4
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1
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3.3k
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Answer: A: Help with "sciClone" process and output
updated 4.7 years ago by 44k • written 8.7 years ago by 22k
2
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1
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4.7k
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Answer: A: How To Get The Number Of Samples And Sample Tcga Id'S That Are Reported In Tcga
updated 4.7 years ago by 44k • written 10.6 years ago by 22k
2
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3
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18k
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Answer: A: Sam To Bam Conversion Reference Fasta File
updated 4.8 years ago by 44k • written 12.5 years ago by 22k
2
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0
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4.3k
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Answer: Answer: Annotating gene fusion predictions
updated 2.1 years ago by 44k • written 8.9 years ago by 22k
0
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1
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1.9k
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Answer: A: sciClone annotation help
updated 4.8 years ago by 44k • written 8.9 years ago by 22k
4
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0
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2.4k
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Answer: A: What is the difference between chr17 and chr17_KI270860v1_alt, for human genome
updated 4.9 years ago by 44k • written 9.5 years ago by 22k
6
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2
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33k
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Answer: A: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 4.9 years ago by 44k • written 10.5 years ago by 22k
2
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2
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7.8k
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Answer: A: Counting Read Support At A Particular Position Of A Bam File
updated 4.9 years ago by 44k • written 11.3 years ago by 22k
3
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1
reply
2.7k
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Answer: A: Readdepth And Exome Sequencing.
updated 5.0 years ago by 44k • written 12.5 years ago by 22k
6
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1
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9.6k
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Answer: A: Split.Screen Function In R
updated 5.0 years ago by 44k • written 12.6 years ago by 22k
0
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0
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3.3k
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Answer: A: M.S In Bioinformatics?
updated 5.0 years ago by 44k • written 12.7 years ago by 22k
7
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0
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3.5k
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Answer: A: Any Experiences/Solutions For Problems With The Last R Update?
updated 5.0 years ago by 44k • written 12.8 years ago by 22k
10
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0
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24k
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Answer: A: What Are The 'Copy Number Detection' Tools Out There For Exome Capture Ngs Data.
updated 5.0 years ago by 44k • written 12.9 years ago by 22k
2
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0
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4.5k
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Answer: A: Front End, Workflow, Or Web Interface For Bioconductor
updated 5.0 years ago by 44k • written 13.2 years ago by 22k
7
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1
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6.6k
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Answer: A: How To Extract Part Of A Line In File ?
updated 5.0 years ago by 44k • written 13.5 years ago by 22k
0
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0
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2.2k
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Answer: A: Removing white space from the beginning of the second field (sequence) in a fast
5.0 years ago by Chris Miller 22k
2
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1
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2.1k
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Answer: A: Using Varscan without a matched normal
5.2 years ago by Chris Miller 22k
3
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0
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1.0k
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Answer: A: How can I get this sorted by ascending order? (when the number and character is
5.2 years ago by Chris Miller 22k
5
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0
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14k
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Answer: A: Tool to separate human and mouse rna seq reads
5.2 years ago by Chris Miller 22k
4
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2
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27k
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Answer: A: Generate All Possible Permutations Of Sample Labels In R
updated 5.2 years ago by 44k • written 12.5 years ago by 22k
2
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1
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22k
views
Answer: A: Which R Packages, If Any, Are Best For Parallel Computing ?
updated 5.3 years ago by 44k • written 14.5 years ago by 22k
2
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0
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14k
views
Answer: A: Concatenate All Vcf.Gz Files
updated 5.3 years ago by 44k • written 10.6 years ago by 22k
478 results • Page 1 of 10
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