Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
0
replies
1.1k
views
Answer: Answer: SciClone R package
2.4 years ago by Chris Miller 22k
1
vote
1
reply
1.4k
views
Answer: Answer: TCGA - Is vital_status subject to follow_up duration?
2.7 years ago by Chris Miller 22k
1
vote
0
replies
1.3k
views
Answer: Answer: Pindel - comparing tumour vs somatic sample
3.1 years ago by Chris Miller 22k
0
votes
1
reply
1.7k
views
Answer: Answer: sciclone iteration does not converge
3.5 years ago by Chris Miller 22k
10
votes
1
reply
15k
views
Answer: A: Problem To Understand Copy-Number Values Per Gene Provided By The Broad Institut
updated 4.7 years ago by 45k • written 13.6 years ago by 22k
1
vote
0
replies
2.3k
views
Answer: A: How to distinguish subclone from sciClone or PyClone result
5.1 years ago by Chris Miller 22k
1
vote
0
replies
1.4k
views
Answer: A: Sciclone cluster all around y=x
5.1 years ago by Chris Miller 22k
0
votes
0
replies
3.2k
views
Answer: Answer: I have a long list of GI and I want their accession number
updated 3.1 years ago by 45k • written 9.3 years ago by 22k
4
votes
0
replies
2.9k
views
Answer: A: Is there any journal where you can post small programs to solve very specific ta
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
1
vote
1
reply
3.6k
views
Answer: A: bedtools intersect: keep pairing consistent
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
2
votes
0
replies
1.6k
views
Answer: A: Hot questions in sequencing data accessability
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
6
votes
1
reply
5.1k
views
Answer: A: Why do people not call normal and tumor variant separately for somatic mutation
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
2
votes
1
reply
4.3k
views
Answer: A: Why is my ADMIXTURE random seed always 43
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
3
votes
2
replies
4.5k
views
Answer: A: Reference and dbSNP incompatibility issue (MuTect2)
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
votes
1
reply
4.3k
views
Answer: A: Generating Read Length?
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
5
votes
1
reply
8.2k
views
Answer: A: Change chromosome notation to match a new reference
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
17
votes
1
reply
49k
views
Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
3
votes
1
reply
3.9k
views
Answer: A: Mixed opinions on somatic variant calling method
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
votes
1
reply
3.8k
views
Answer: A: How can a gene exist on three different chromosomes!?!?
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
2
votes
1
reply
5.4k
views
Answer: A: HiSeq vs GA for RNASeqV2 on TCGA
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
3
votes
0
replies
4.1k
views
Answer: A: Calling variants in blood tumor samples without matched normal samples
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
votes
1
reply
5.3k
views
Answer: A: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 5.4 years ago by 45k • written 11.0 years ago by 22k
1
vote
1
reply
4.8k
views
Answer: C: tbl2asn Permission denied on Mac
updated 5.4 years ago by 45k • written 11.1 years ago by 22k
2
votes
1
reply
3.1k
views
Answer: A: Is it correct to merge TCGA mutation data from multiple centers
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
votes
1
reply
4.3k
views
Answer: A: Somatic allele frequency from TCGA in non-coding DNA
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
0
votes
1
reply
2.7k
views
Answer: A: Pathway enrichment for Copy Number Alterations (CNA)
updated 5.4 years ago by 45k • written 9.3 years ago by 22k
3
votes
0
replies
3.9k
views
Answer: A: What is a repetitive region?
updated 5.4 years ago by 45k • written 11.1 years ago by 22k
2
votes
0
replies
3.4k
views
Answer: A: Spliting a dataframe based in a chromosome
updated 5.4 years ago by 45k • written 11.1 years ago by 22k
4
votes
1
reply
3.7k
views
Answer: A: Help with "sciClone" process and output
updated 5.4 years ago by 45k • written 9.4 years ago by 22k
2
votes
1
reply
5.1k
views
Answer: A: How To Get The Number Of Samples And Sample Tcga Id'S That Are Reported In Tcga
updated 5.4 years ago by 45k • written 11.3 years ago by 22k
2
votes
3
replies
18k
views
Answer: A: Sam To Bam Conversion Reference Fasta File
updated 5.5 years ago by 45k • written 13.2 years ago by 22k
2
votes
0
replies
4.9k
views
Answer: Answer: Annotating gene fusion predictions
updated 2.8 years ago by 45k • written 9.6 years ago by 22k
0
votes
1
reply
2.0k
views
Answer: A: sciClone annotation help
updated 5.5 years ago by 45k • written 9.6 years ago by 22k
4
votes
0
replies
2.6k
views
Answer: A: What is the difference between chr17 and chr17_KI270860v1_alt, for human genome
updated 5.6 years ago by 45k • written 10.2 years ago by 22k
6
votes
2
replies
35k
views
Answer: A: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.6 years ago by 45k • written 11.2 years ago by 22k
2
votes
2
replies
8.1k
views
Answer: A: Counting Read Support At A Particular Position Of A Bam File
updated 5.6 years ago by 45k • written 12.0 years ago by 22k
3
votes
1
reply
2.9k
views
Answer: A: Readdepth And Exome Sequencing.
updated 5.7 years ago by 45k • written 13.2 years ago by 22k
6
votes
1
reply
10k
views
Answer: A: Split.Screen Function In R
updated 5.7 years ago by 45k • written 13.3 years ago by 22k
0
votes
0
replies
3.7k
views
Answer: A: M.S In Bioinformatics?
updated 5.7 years ago by 45k • written 13.4 years ago by 22k
7
votes
0
replies
3.9k
views
Answer: A: Any Experiences/Solutions For Problems With The Last R Update?
updated 5.7 years ago by 45k • written 13.5 years ago by 22k
10
votes
0
replies
24k
views
Answer: A: What Are The 'Copy Number Detection' Tools Out There For Exome Capture Ngs Data.
updated 5.7 years ago by 45k • written 13.6 years ago by 22k
2
votes
0
replies
5.0k
views
Answer: A: Front End, Workflow, Or Web Interface For Bioconductor
updated 5.7 years ago by 45k • written 13.9 years ago by 22k
7
votes
1
reply
7.7k
views
Answer: A: How To Extract Part Of A Line In File ?
updated 5.7 years ago by 45k • written 14.2 years ago by 22k
0
votes
0
replies
2.5k
views
Answer: A: Removing white space from the beginning of the second field (sequence) in a fast
5.7 years ago by Chris Miller 22k
2
votes
1
reply
2.5k
views
Answer: A: Using Varscan without a matched normal
5.9 years ago by Chris Miller 22k
3
votes
0
replies
1.2k
views
Answer: A: How can I get this sorted by ascending order? (when the number and character is
5.9 years ago by Chris Miller 22k
5
votes
0
replies
17k
views
Answer: A: Tool to separate human and mouse rna seq reads
5.9 years ago by Chris Miller 22k
4
votes
2
replies
28k
views
Answer: A: Generate All Possible Permutations Of Sample Labels In R
updated 5.9 years ago by 45k • written 13.2 years ago by 22k
2
votes
1
reply
23k
views
Answer: A: Which R Packages, If Any, Are Best For Parallel Computing ?
updated 6.0 years ago by 45k • written 15.2 years ago by 22k
2
votes
0
replies
14k
views
Answer: A: Concatenate All Vcf.Gz Files
updated 6.0 years ago by 45k • written 11.3 years ago by 22k
478 results • Page 1 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6