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3
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0
replies
1.2k
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Answer:
A: Free for academic use only licenses (If you want to sell your software please ju
5.0 years ago by
Chris Miller
22k
1
vote
1
reply
2.4k
views
Answer:
A: HGVS format to VCF from portal.gdc.cancer.gov
5.0 years ago by
Chris Miller
22k
1
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0
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8.2k
views
Answer:
A: Saving 3D plot from rgl as a pdf
5.1 years ago by
Chris Miller
22k
2
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1
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3.1k
views
Answer:
A: CNVkit: Choice of Bin Size and CNV Calling
5.2 years ago by
Chris Miller
22k
3
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2.3k
views
Answer:
A: Reproducing this picture
5.2 years ago by
Chris Miller
22k
1
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1
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1.5k
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Answer:
A: Detecting known, low frequency SNPs in bacterial populations
5.3 years ago by
Chris Miller
22k
1
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0
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1.3k
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Answer:
A: Does sciClone work on mouse exome data?
5.3 years ago by
Chris Miller
22k
0
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0
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1.3k
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Answer:
A: SciClone works with 1d clustering, but not 2d?
5.3 years ago by
Chris Miller
22k
1
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1.2k
views
Answer:
A: regions with very different VAF fall into one cluster
5.3 years ago by
Chris Miller
22k
0
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2.1k
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Answer:
A: Convert indel list with [-/A] notation to VCF with adjacent base
5.3 years ago by
Chris Miller
22k
0
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1.5k
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Answer:
A: Cancer Genomics and Bioinformatics positions at WashU (Griffith Lab)
5.4 years ago by
Chris Miller
22k
0
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0
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1.6k
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Answer:
A: Postdoc position in single-cell cancer genomics
5.4 years ago by
Chris Miller
22k
1
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1.2k
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Answer:
A: Get Flanking Amino Acid Sequence
5.4 years ago by
Chris Miller
22k
2
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1.5k
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Answer:
A: Getting same SNPs both in cancer and normal files when seen in IGV - Integrativ
5.4 years ago by
Chris Miller
22k
1
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1
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2.2k
views
Answer:
A: a question about fishplot
5.5 years ago by
Chris Miller
22k
1
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0
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4.4k
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Answer:
A: How to load BAM files that do not have chromosome name in the header?
5.5 years ago by
Chris Miller
22k
1
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0
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4.6k
views
Answer:
A: How can I find motifs under individual ATAC-peaks?
5.6 years ago by
Chris Miller
22k
1
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1
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3.7k
views
Answer:
A: Where are mutation files (MAF) for TCGA normal samples on Firebrowse
5.6 years ago by
Chris Miller
22k
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1.2k
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Answer:
A: Calling CNVs from WGS data
5.6 years ago by
Chris Miller
22k
2
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1
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2.9k
views
Answer:
A: Running sciClone on cell prevalence (CP) data
updated 5.6 years ago by
Ram
43k • written 8.2 years ago by
Chris Miller
22k
2
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0
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2.2k
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Answer:
A: Is there a database which gives meta-level information of mutation(both nuclueot
updated 5.6 years ago by
Ram
43k • written 8.2 years ago by
Chris Miller
22k
1
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0
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6.7k
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Answer:
A: R phangorn phylogenetic analysis from somatic mutations' binary table
updated 5.6 years ago by
Ram
43k • written 8.2 years ago by
Chris Miller
22k
0
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0
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1.8k
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Answer:
A: sciClone annotation file
updated 5.6 years ago by
Ram
43k • written 8.2 years ago by
Chris Miller
22k
2
votes
1
reply
4.4k
views
Answer:
A: Extracting Reads by position
updated 5.6 years ago by
Ram
43k • written 8.2 years ago by
Chris Miller
22k
0
votes
2
replies
17k
views
Answer:
A: Writing Collaboration With Source-Control And Microsoft-Word
updated 5.6 years ago by
Ram
43k • written 13.8 years ago by
Chris Miller
22k
1
vote
0
replies
2.8k
views
Answer:
A: What Is The Statistical Framework To Compare Distribution Of Two Samples Of Geno
updated 5.6 years ago by
Ram
43k • written 13.8 years ago by
Chris Miller
22k
1
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0
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12k
views
Answer:
A: Statistics: Combinations In Python
updated 5.6 years ago by
Ram
43k • written 13.9 years ago by
Chris Miller
22k
4
votes
0
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7.4k
views
Answer:
A: How Can I Read The Contents Of Rdata!, Where Is It Located ? And How Can I Acces
updated 5.6 years ago by
Ram
43k • written 13.9 years ago by
Chris Miller
22k
1
vote
0
replies
1.9k
views
Answer:
A: Plotting Lines Of A Table In R
updated 5.6 years ago by
Ram
43k • written 13.9 years ago by
Chris Miller
22k
3
votes
1
reply
8.4k
views
Answer:
A: Rearranging Dna Sequences
updated 5.6 years ago by
Ram
43k • written 14.1 years ago by
Chris Miller
22k
5
votes
4
replies
23k
views
Answer:
Answer: How Do I Access And Query Entire Genome Sequences With R
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Chris Miller
22k
1
vote
0
replies
1000
views
Answer:
A: high frequency SNPs (and other variations) after subtracting blood variants from
5.8 years ago by
Chris Miller
22k
3
votes
0
replies
2.2k
views
Answer:
A: Should bioinformaticians learn the scientific names of plants and animals?
5.8 years ago by
Chris Miller
22k
3
votes
0
replies
1.2k
views
Answer:
A: How to distinguish methylated cytosine and unmethylathed cytosine?
5.8 years ago by
Chris Miller
22k
3
votes
0
replies
2.3k
views
Answer:
A: Neoantigen prediction Tools
5.8 years ago by
Chris Miller
22k
0
votes
0
replies
992
views
Answer:
A: Clonal evolution for samples with no common CNV
5.9 years ago by
Chris Miller
22k
1
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1
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1.9k
views
Answer:
A: SciClone: Why cluster in non-CN neutral region considering it infers only on CN
5.9 years ago by
Chris Miller
22k
1
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0
replies
2.0k
views
Answer:
A: Sciclone took too long
5.9 years ago by
Chris Miller
22k
1
vote
0
replies
3.2k
views
Answer:
A: Sciclone clonevol integration
5.9 years ago by
Chris Miller
22k
1
vote
0
replies
1.2k
views
Answer:
A: Can sciclone handle multiallelic variants?
5.9 years ago by
Chris Miller
22k
0
votes
0
replies
1.4k
views
Answer:
A: somaticsniper VAF calclulation
5.9 years ago by
Chris Miller
22k
1
vote
1
reply
1.3k
views
Answer:
A: How can you sort variants based on their positions from upstream to downstream?
6.1 years ago by
Chris Miller
22k
1
vote
0
replies
2.4k
views
Answer:
A: IGV - is there a way to extract bulk information?
6.1 years ago by
Chris Miller
22k
1
vote
0
replies
4.9k
views
Answer:
A: samtools view: failed to open "sort" for reading: No such file or directory
updated 6.1 years ago by
Ram
43k • written 6.1 years ago by
Chris Miller
22k
1
vote
1
reply
2.3k
views
Answer:
A: WGS coverage (depth) for CNV detection
6.2 years ago by
Chris Miller
22k
0
votes
0
replies
1.2k
views
Answer:
A: Does sequence length matter for CNV and variants?
6.2 years ago by
Chris Miller
22k
0
votes
0
replies
2.6k
views
Answer:
A: SciClone: Tumor purity estimation
6.2 years ago by
Chris Miller
22k
1
vote
1
reply
1.7k
views
Answer:
A: Mapping Protein Mutation to Genomic DNA
6.2 years ago by
Chris Miller
22k
0
votes
0
replies
3.2k
views
Answer:
A: Indel concordance from different VCF files
6.2 years ago by
Chris Miller
22k
2
votes
1
reply
4.2k
views
Answer:
A: Saving IGV images for bigwig files
6.2 years ago by
Chris Miller
22k
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