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Comment: Comment: Jointly analyzing DEGs - my RNA-seq and GTEx - How to do it properly?
8 months ago by achamess ▴ 90
2
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3
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527
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Jointly analyzing DEGs - my RNA-seq and GTEx - How to do it properly?
rnaseq gtex
8 months ago by achamess ▴ 90
6
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7
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7.8k
views
7 follow
How to find CpG island shore?
methylation
updated 17 months ago by ★ 1.0k • written 9.9 years ago by ▴ 90
0
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0
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2.5k
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Comment: Comment: Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to G
17 months ago by achamess ▴ 90
0
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0
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2.5k
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Comment: Comment: Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to G
17 months ago by achamess ▴ 90
4
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5
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2.5k
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Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to Gene Names.
ensembl single_cell genomics
updated 17 months ago by 13k • written 17 months ago by ▴ 90
0
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1
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4.0k
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Comment: C: Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
4.6 years ago by achamess ▴ 90
4
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3
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4.0k
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Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
scRNA-seq RNA-seq Kallisto
updated 4.6 years ago by ▴ 700 • written 4.6 years ago by ▴ 90
5
votes
2
replies
15k
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Using the row order of one pheatmap to set the order of another. How to do it?
RNA-Seq pheatmap R
updated 4.8 years ago by 43k • written 7.6 years ago by ▴ 90
0
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0
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6.1k
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Answer: A: How To Plot Rarefaction/Saturation Curve Based On Bam File Generated By Tophat?
5.8 years ago by achamess ▴ 90
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0
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5.1k
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Comment: C: RNA seq saturation analysis
5.8 years ago by achamess ▴ 90
0
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4
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1.8k
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Pseudoreplication and comparing RNA-seq samples from the same animal
RNA-Seq
6.2 years ago by achamess ▴ 90
0
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2
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1.8k
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Answer: A: Pseudoreplication and comparing RNA-seq samples from the same animal
6.2 years ago by achamess ▴ 90
3
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1
reply
3.8k
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Answer: A: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
7.0 years ago by achamess ▴ 90
0
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0
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3.8k
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Comment: C: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
7.0 years ago by achamess ▴ 90
6
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9
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3.8k
views
Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
sequencing RNA-Seq
7.0 years ago by achamess ▴ 90
0
votes
1
reply
3.8k
views
Comment: C: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
7.0 years ago by achamess ▴ 90
0
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1
reply
3.8k
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Comment: C: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
7.0 years ago by achamess ▴ 90
0
votes
0
replies
1.3k
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Interpretation of Gene Body Distribution from nuclear RNA-Seq
RNA-Seq
7.2 years ago by achamess ▴ 90
0
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0
replies
3.1k
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Comment: C: RSeQC GeneBody function error. Stops at R Script Step
7.2 years ago by achamess ▴ 90
0
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0
replies
3.1k
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Comment: C: RSeQC GeneBody function error. Stops at R Script Step
7.2 years ago by achamess ▴ 90
4
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3
replies
3.1k
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RSeQC GeneBody function error. Stops at R Script Step
RNA-Seq software error
updated 7.2 years ago by ▴ 200 • written 7.2 years ago by ▴ 90
0
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1
reply
3.2k
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Comment: C: Ensembl GTF for Mouse that includes intron, exons, utrs, etc.
7.2 years ago by achamess ▴ 90
0
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1
reply
3.2k
views
Comment: C: Ensembl GTF for Mouse that includes intron, exons, utrs, etc.
7.2 years ago by achamess ▴ 90
1
vote
5
replies
3.2k
views
Ensembl GTF for Mouse that includes intron, exons, utrs, etc.
RNA-Seq
7.2 years ago by achamess ▴ 90
0
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0
replies
21k
views
Comment: C: Where To Download Genome Annotation Including Exon, Intron, Utr, Intergenic Info
7.2 years ago by achamess ▴ 90
1
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4
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5.0k
views
Code for iteratively executing an alignment package (Kallisto) on multiple files in a directory and uniquely creating an output file
RNA-Seq
updated 7.6 years ago by • 0 • written 8.0 years ago by ▴ 90
2
votes
6
replies
3.6k
views
Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Would you include in a differential gene expression analysis?
RNA-Seq alignment
7.8 years ago by achamess ▴ 90
0
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0
replies
3.6k
views
Answer: A: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
7.8 years ago by achamess ▴ 90
0
votes
1
reply
3.6k
views
Comment: C: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
7.8 years ago by achamess ▴ 90
0
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0
replies
3.6k
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Comment: C: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
7.8 years ago by achamess ▴ 90
0
votes
1
reply
5.0k
views
Comment: C: Code for iteratively executing an alignment package (Kallisto) on multiple files
8.0 years ago by achamess ▴ 90
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