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Comment: Comment: Jointly analyzing DEGs - my RNA-seq and GTEx - How to do it properly?
2.3 years ago by achamess ▴ 90
2
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3
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1.2k
views
Jointly analyzing DEGs - my RNA-seq and GTEx - How to do it properly?
rnaseq gtex
2.3 years ago by achamess ▴ 90
6
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7
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10k
views
7 follow
How to find CpG island shore?
methylation
updated 3.0 years ago by ★ 1.1k • written 11.5 years ago by ▴ 90
0
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0
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4.9k
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Comment: Comment: Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to G
3.0 years ago by achamess ▴ 90
0
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0
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4.9k
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Comment: Comment: Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to G
3.0 years ago by achamess ▴ 90
4
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5
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4.9k
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Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to Gene Names.
ensembl single_cell genomics
updated 3.0 years ago by 13k • written 3.0 years ago by ▴ 90
0
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1
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4.8k
views
Comment: C: Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
6.2 years ago by achamess ▴ 90
4
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3
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4.8k
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Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
scRNA-seq RNA-seq Kallisto
updated 6.2 years ago by ▴ 720 • written 6.2 years ago by ▴ 90
5
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2
replies
18k
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Using the row order of one pheatmap to set the order of another. How to do it?
RNA-Seq pheatmap R
updated 6.4 years ago by 45k • written 9.1 years ago by ▴ 90
0
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0
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6.8k
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Answer: A: How To Plot Rarefaction/Saturation Curve Based On Bam File Generated By Tophat?
7.3 years ago by achamess ▴ 90
0
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0
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6.1k
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Comment: C: RNA seq saturation analysis
7.3 years ago by achamess ▴ 90
0
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2
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2.3k
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Answer: A: Pseudoreplication and comparing RNA-seq samples from the same animal
7.8 years ago by achamess ▴ 90
0
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4
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2.3k
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Pseudoreplication and comparing RNA-seq samples from the same animal
RNA-Seq
7.8 years ago by achamess ▴ 90
3
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1
reply
4.7k
views
Answer: A: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
8.6 years ago by achamess ▴ 90
0
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0
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4.7k
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Comment: C: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
8.6 years ago by achamess ▴ 90
6
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9
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4.7k
views
Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
sequencing RNA-Seq
8.6 years ago by achamess ▴ 90
0
votes
1
reply
4.7k
views
Comment: C: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
8.6 years ago by achamess ▴ 90
0
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1
reply
4.7k
views
Comment: C: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
8.6 years ago by achamess ▴ 90
0
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0
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1.5k
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Interpretation of Gene Body Distribution from nuclear RNA-Seq
RNA-Seq
8.7 years ago by achamess ▴ 90
0
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0
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3.8k
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Comment: C: RSeQC GeneBody function error. Stops at R Script Step
8.7 years ago by achamess ▴ 90
0
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0
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3.8k
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Comment: C: RSeQC GeneBody function error. Stops at R Script Step
8.7 years ago by achamess ▴ 90
4
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3
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3.8k
views
RSeQC GeneBody function error. Stops at R Script Step
RNA-Seq software error
updated 8.7 years ago by ▴ 200 • written 8.7 years ago by ▴ 90
0
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1
reply
3.8k
views
Comment: C: Ensembl GTF for Mouse that includes intron, exons, utrs, etc.
8.7 years ago by achamess ▴ 90
0
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1
reply
3.8k
views
Comment: C: Ensembl GTF for Mouse that includes intron, exons, utrs, etc.
8.7 years ago by achamess ▴ 90
1
vote
5
replies
3.8k
views
Ensembl GTF for Mouse that includes intron, exons, utrs, etc.
RNA-Seq
8.7 years ago by achamess ▴ 90
0
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0
replies
25k
views
Comment: C: Where To Download Genome Annotation Including Exon, Intron, Utr, Intergenic Info
8.7 years ago by achamess ▴ 90
1
vote
4
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5.5k
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Code for iteratively executing an alignment package (Kallisto) on multiple files in a directory and uniquely creating an output file
RNA-Seq
updated 9.2 years ago by • 0 • written 9.5 years ago by ▴ 90
2
votes
6
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4.8k
views
Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Would you include in a differential gene expression analysis?
RNA-Seq alignment
9.3 years ago by achamess ▴ 90
0
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0
replies
4.8k
views
Answer: A: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
9.3 years ago by achamess ▴ 90
0
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1
reply
4.8k
views
Comment: C: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
9.3 years ago by achamess ▴ 90
0
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0
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4.8k
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Comment: C: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
9.3 years ago by achamess ▴ 90
0
votes
1
reply
5.5k
views
Comment: C: Code for iteratively executing an alignment package (Kallisto) on multiple files
9.5 years ago by achamess ▴ 90
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