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vcftools and SnpSift give different values for Ts/Tv ratio
variant SNP vcf transversion transition
updated 3.9 years ago by 45k • written 10.6 years ago by ▴ 380
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1
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9.6k
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Answer: A: Oncofuse: Prediction Of Driver Gene Fusions From Ngs Data
updated 5.8 years ago by 45k • written 10.4 years ago by ▴ 380
1
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1
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9.6k
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Comment: C: Oncofuse: Prediction Of Driver Gene Fusions From Ngs Data
updated 5.8 years ago by 45k • written 10.4 years ago by ▴ 380
0
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1
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9.6k
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Comment: C: Oncofuse: Prediction Of Driver Gene Fusions From Ngs Data
updated 5.8 years ago by 45k • written 10.4 years ago by ▴ 380
1
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1
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3.6k
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Comment: C: Any advice on how to do isoform quantification?
updated 5.9 years ago by 45k • written 10.3 years ago by ▴ 380
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12k
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Comment: Comment: What means Gaussian Kernel?
updated 3.0 years ago by 45k • written 10.1 years ago by ▴ 380
1
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1
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12k
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Answer: Answer: What means Gaussian Kernel?
updated 3.0 years ago by 45k • written 10.1 years ago by ▴ 380
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0
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4.2k
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Comment: C: Taking genotypes out of a vcf file
10.2 years ago by ethan.kaufman ▴ 380
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0
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3.5k
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Comment: Comment: RNA Seq correlation with P value
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 380
2
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1
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1.6k
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Comment: C: How to define single base genotype for mixed results
10.2 years ago by ethan.kaufman ▴ 380
1
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1
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7.7k
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Answer: Answer: Sample Correlation in RNA-Seq data
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 380
1
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1
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5.8k
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Comment: Comment: How to get mutation frequency from exome sequencing data?
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 380
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1
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5.8k
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Comment: Comment: How to get mutation frequency from exome sequencing data?
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 380
3
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1
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5.8k
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Answer: Answer: How to get mutation frequency from exome sequencing data?
updated 2.8 years ago by 45k • written 10.3 years ago by ▴ 380
4
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0
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10k
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Answer: Answer: Make 2 boxplot from a data frame by plotting values in 1 row with different col
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 380
3
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1
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2.6k
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Answer: Answer: Unusual notation of p-values
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 380
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0
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2.5k
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Answer: Answer: What is the control level of activation in Paradigm?
updated 4.1 years ago by 45k • written 10.3 years ago by ▴ 380
8
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0
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7.2k
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Answer: Answer: Pathway and Network Analysis
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 380
3
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0
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3.2k
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Answer: Answer: Identifying repeated genes from multiple lists
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 380
0
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1
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4.9k
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Comment: Comment: Recommended biology/genomics book for computer scientist students
updated 2.7 years ago by 45k • written 10.4 years ago by ▴ 380
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0
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5.0k
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Comment: Comment: nb spanning reads confusion in Tophat Fusion output
updated 2.7 years ago by 45k • written 10.4 years ago by ▴ 380
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0
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4.4k
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Comment: C: How to compute scale bar of the dendrogram for heatmap using heatmap2 ?
10.4 years ago by ethan.kaufman ▴ 380
1
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1
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5.0k
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Comment: Comment: nb spanning reads confusion in Tophat Fusion output
updated 2.7 years ago by 45k • written 10.4 years ago by ▴ 380
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0
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4.0k
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Answer: Answer: GSEA background list
updated 2.7 years ago by 45k • written 10.4 years ago by ▴ 380
0
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5
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4.1k
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Short homopolymer runs overrepresented at 3' ends of R2 Illumina RNAseq reads, breaking tophat alignment
RNA-Seq QC
updated 2.6 years ago by 45k • written 10.5 years ago by ▴ 380
2
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1
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5.0k
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Answer: Answer: nb spanning reads confusion in Tophat Fusion output
updated 2.7 years ago by 45k • written 10.4 years ago by ▴ 380
0
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1
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18k
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Comment: C: Tool to separate human and mouse ran seq reads
10.4 years ago by ethan.kaufman ▴ 380
0
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1
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18k
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Comment: Comment: Tool to separate human and mouse rna seq reads
updated 2.7 years ago by 45k • written 10.4 years ago by ▴ 380
5
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1
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18k
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Answer: Answer: Tool to separate human and mouse rna seq reads
updated 2.7 years ago by 45k • written 10.4 years ago by ▴ 380
0
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0
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4.1k
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Comment: Comment: Short homopolymer runs overrepresented at 3' ends of R2 Illumina RNAseq reads, b
updated 2.6 years ago by 45k • written 10.4 years ago by ▴ 380
0
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1
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4.1k
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Comment: Comment: Short homopolymer runs overrepresented at 3' ends of R2 Illumina RNAseq reads, b
updated 3.3 years ago by 45k • written 10.4 years ago by ▴ 380
0
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1
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4.4k
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Comment: Comment: How many poor quality bases define a bad read (using fastx or equivalent)?
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 380
0
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1
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4.4k
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Answer: Answer: How many poor quality bases define a bad read (using fastx or equivalent)?
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 380
0
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0
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4.1k
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Comment: Comment: Short homopolymer runs overrepresented at 3' ends of R2 Illumina RNAseq reads, b
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 380
0
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0
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4.2k
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Comment: Comment: Rnaseq: Can I Parallelize The Tophat Step ?
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 380
0
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1
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4.2k
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Comment: Comment: Rnaseq: Can I Parallelize The Tophat Step ?
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 380
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