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1.2k
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Answer:
Answer: Converting gff3 to gtf file format?
2.1 years ago by
Juke34
8.6k
3
votes
1
reply
2.0k
views
Answer:
Answer: Perl modules for RepeatModeler
2.1 years ago by
Juke34
8.6k
1
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1
reply
1.6k
views
Answer:
Answer: Error when trying to convert exonerate output to gff3
2.2 years ago by
Juke34
8.6k
1
vote
1
reply
1.4k
views
Answer:
Answer: Continuing issues with MAKER and SNAP
2.2 years ago by
Juke34
8.6k
3
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0
replies
1.0k
views
Answer:
Answer: format the gtf file
2.2 years ago by
Juke34
8.6k
2
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2
replies
2.3k
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Answer:
Answer: How can I merge GFF files together to produce a file with gene functions from bo
2.2 years ago by
Juke34
8.6k
0
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0
replies
914
views
Answer:
Answer: Output splicing for alignment with gff or gtf
2.2 years ago by
Juke34
8.6k
1
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1
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3.0k
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Answer:
Answer: Extract information from gtf file
2.3 years ago by
Juke34
8.6k
0
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0
replies
794
views
Answer:
Answer: How extract a specific part of sequence from a gtf file?
2.3 years ago by
Juke34
8.6k
0
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1
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1.6k
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Answer:
Answer: How to solve Non-unique top level ID error in Maker annotation pipeline ?
2.3 years ago by
Juke34
8.6k
0
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0
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758
views
Answer:
Answer: Tools to compare genome annotations ?
2.4 years ago by
Juke34
8.6k
3
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1
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4.2k
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Answer:
Answer: In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
2.4 years ago by
Juke34
8.6k
0
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0
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688
views
Answer:
Answer: Getting sequence from any fasta based on coordinates
2.4 years ago by
Juke34
8.6k
1
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0
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2.2k
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Answer:
Answer: How to extract promoter sequences from rice transcriptome.gtf file ?
2.5 years ago by
Juke34
8.6k
0
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0
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7.9k
views
Answer:
Answer: Explanation of ENSEMBL GTF features
2.5 years ago by
Juke34
8.6k
1
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1
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1.2k
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Answer:
Answer: Error in gff file
2.5 years ago by
Juke34
8.6k
0
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0
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1.5k
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Answer:
Answer: Running RepeatMasker with RepeatModeler database
2.5 years ago by
Juke34
8.6k
2
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0
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1.4k
views
Answer:
Answer: Courses in RNAseq data
2.6 years ago by
Juke34
8.6k
1
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1
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2.4k
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Answer:
Answer: Issues installing vep
2.6 years ago by
Juke34
8.6k
1
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2
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3.3k
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Answer:
Answer: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
updated 3 months ago by
GenoMax
142k • written 2.7 years ago by
Juke34
8.6k
0
votes
0
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754
views
Answer:
Answer: easy way to fetch out the surrounding CDS of a pair of given coordinates
2.7 years ago by
Juke34
8.6k
2
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1
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6.0k
views
Answer:
Answer: Extracting exons and transcripts from gff3/gtf
2.7 years ago by
Juke34
8.6k
1
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1
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2.9k
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Answer:
Answer: gffread error
2.7 years ago by
Juke34
8.6k
1
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1
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658
views
Answer:
Answer: Can the Non strand specify RNAseq data annotate genome?
2.7 years ago by
Juke34
8.6k
1
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1
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3.3k
views
Answer:
Answer: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
2.7 years ago by
Juke34
8.6k
1
vote
0
replies
1.2k
views
Answer:
Answer: "gt gff3 -sortlines -tidy -retainids" reduce some lines
2.7 years ago by
Juke34
8.6k
3
votes
1
reply
1.9k
views
Answer:
Answer: Blank output When converting GFF3 file to GTF using either gffread or AGAT
2.7 years ago by
Juke34
8.6k
1
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0
replies
2.2k
views
Answer:
Answer: Looking tools for genes annotation
2.7 years ago by
Juke34
8.6k
1
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1
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826
views
Answer:
Answer: Convert gff3 (or .out file) in RepeatMasker into tbl format
2.7 years ago by
Juke34
8.6k
0
votes
1
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1.6k
views
Answer:
Answer: SRA/ENA library layout is inconsistent with the data source
2.7 years ago by
Juke34
8.6k
0
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2
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1.9k
views
Answer:
Answer: GRCh37 GFF filter transcript isoforms by RefSeq Select tag or longest
2.7 years ago by
Juke34
8.6k
1
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1
reply
2.0k
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Answer:
Answer: How to fix GTF files by adding specific strings into empty gene_id ""
2.7 years ago by
Juke34
8.6k
0
votes
0
replies
1.3k
views
Answer:
Answer: How to split big .faa file into smaller .faa files
2.8 years ago by
Juke34
8.6k
2
votes
2
replies
2.4k
views
Answer:
Answer: How to trim a GFF3 file based on specific coordinates?
2.8 years ago by
Juke34
8.6k
0
votes
0
replies
610
views
Answer:
Answer: How do I extract predicted genes from annotation from MAKER-P?
2.8 years ago by
Juke34
8.6k
0
votes
0
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1.7k
views
Answer:
Answer: homebrew Vs bioconda
2.8 years ago by
Juke34
8.6k
0
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1
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17k
views
Answer:
Answer: gff3 to CDS fasta
2.9 years ago by
Juke34
8.6k
2
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0
replies
1.7k
views
Answer:
Answer: Weird characters in yeast reference gff3
2.9 years ago by
Juke34
8.6k
0
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1
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3.5k
views
Answer:
Answer: Trim bam file reads to remove all nucleotide over a certain length
2.9 years ago by
Juke34
8.6k
1
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0
replies
2.1k
views
Answer:
Answer: Trim bam file reads to the same length
2.9 years ago by
Juke34
8.6k
1
vote
1
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1.6k
views
Answer:
Answer: Extract transcript fasta using gff
2.9 years ago by
Juke34
8.6k
2
votes
0
replies
14k
views
Answer:
Answer: How to trim Nanopore reads. Please suggest a tool.
2.9 years ago by
Juke34
8.6k
0
votes
1
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858
views
Answer:
Answer: Subset gff with non-unique seqid
2.9 years ago by
Juke34
8.6k
3
votes
0
replies
1.0k
views
Answer:
Answer: Bedtools Intersect
2.9 years ago by
Juke34
8.6k
2
votes
1
reply
1.6k
views
Answer:
Answer: Genome annotation file GFF3 and GTF same? interchangeable?
2.9 years ago by
Juke34
8.6k
0
votes
0
replies
1.1k
views
Answer:
Answer: Transfer annotation from fasta headers to associated gff
3.0 years ago by
Juke34
8.6k
0
votes
0
replies
3.1k
views
Answer:
Answer: Maker Failed while doing repeat masking
3.0 years ago by
Juke34
8.6k
1
vote
2
replies
1.0k
views
Answer:
Answer: Difference between fCDS and CDS
3.0 years ago by
Juke34
8.6k
1
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1
reply
1.2k
views
Answer:
Answer: gffread doesn't convert gff to gtf (blank file)
3.0 years ago by
Juke34
8.6k
3
votes
0
replies
2.9k
views
Answer:
Answer: Why is human genome FASTA file on GENCODE much smaller than that on ENSEMBL?
3.0 years ago by
Juke34
8.6k
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