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2
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1
reply
4.1k
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ChIPseq paired-end bowtie2 concern regarding biological replicates
bowtie2 ChIP-Seq paired-end
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 360
14
votes
17
replies
37k
views
6 follow
Does TSS = first exon?
exon transcription-start-site
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 360
6
votes
9
replies
8.0k
views
Is ggplot2 better than heatmap.2 in R?
heatmap R ggplot2
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 360
37
votes
15
replies
48k
views
8 follow
FPKM vs raw counts vs RPKM
counts rpkm raw fpkm RNA-Seq
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
3
votes
5
replies
3.7k
views
Are exons within a .gtf file experimentally verified or computationally predicted?
exon gtf
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
3
votes
1
reply
11k
views
Should I use data scaling for heatmaps?
RNA-Seq heatmap
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 360
2
votes
2
replies
19k
views
Comment: Comment: HeatmapGenerator: High performance RNAseq and microarray visualization software
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
2
votes
1
reply
19k
views
Answer: Answer: HeatmapGenerator: High performance RNAseq and microarray visualization software
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
2
votes
3
replies
3.8k
views
When to use FPKM over raw counts or vice-versa?
counts fpkm RNA-Seq
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
0
votes
2
replies
5.0k
views
Comment: Comment: Can differential gene expression heatmaps be compared across multiple separate e
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
0
votes
4
replies
5.0k
views
Can differential gene expression heatmaps be compared across multiple separate experiments?
heatmap RNA-Seq
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
0
votes
0
replies
48k
views
Comment: Comment: FPKM vs raw counts vs RPKM
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
0
votes
0
replies
48k
views
Comment: C: FPKM vs raw counts vs RPKM
10.9 years ago by NHEJ ▴ 360
1
vote
0
replies
48k
views
Comment: Comment: FPKM vs raw counts vs RPKM
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
0
votes
1
reply
48k
views
Comment: Comment: FPKM vs raw counts vs RPKM
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
0
votes
1
reply
3.7k
views
Comment: Comment: Are exons within a .gtf file experimentally verified or computationally predicte
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
0
votes
1
reply
3.7k
views
Comment: Comment: Are exons within a .gtf file experimentally verified or computationally predicte
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 360
13
votes
6
replies
8.7k
views
What is trace in R's heatmap.2 function?
RNA-seq R trace gplots heatmap.2
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 360
2
votes
1
reply
8.7k
views
Comment: C: What is trace in R's heatmap.2 function?
11.0 years ago by NHEJ ▴ 360
0
votes
2
replies
7.0k
views
Comment: Comment: How is FPKM variability handled?
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 360
0
votes
1
reply
7.0k
views
Comment: Comment: How is FPKM variability handled?
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 360
13
votes
12
replies
7.0k
views
How is FPKM variability handled?
RNA-Seq FPKM
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 360
0
votes
2
replies
7.0k
views
Comment: Comment: How is FPKM variability handled?
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 360
1
vote
1
reply
2.4k
views
Sampling error in well-mixed homogeneous samples
sampling-error
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 360
3
votes
3
replies
3.5k
views
What is a good ChIPseq peak distance cutoff?
ChIP-Seq
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 360
0
votes
1
reply
37k
views
Comment: Comment: Does TSS = first exon?
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 360
0
votes
0
replies
37k
views
Comment: Comment: Does TSS = first exon?
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 360
0
votes
2
replies
37k
views
Comment: Comment: Does TSS = first exon?
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 360
0
votes
1
reply
37k
views
Comment: Comment: Does TSS = first exon?
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 360
14
votes
7
replies
7.0k
views
6 follow
Drawing ChIPseq graphics
ChIP-Seq plots
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 360
0
votes
0
replies
8.0k
views
Comment: Comment: Is ggplot2 better than heatmap.2 in R?
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 360
0
votes
0
replies
8.0k
views
Comment: Comment: Is ggplot2 better than heatmap.2 in R?
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 360
0
votes
1
reply
8.0k
views
Comment: C: Is ggplot2 better than heatmap.2 in R?
11.3 years ago by NHEJ ▴ 360
0
votes
0
replies
6.4k
views
Answer: Answer: how to install macs and use it
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 360
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